CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

Fold 2D structure prediction for record ASE_00343



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by Fold (lower part) secondary structures of RNA chain ASE_00343.

Download Fold input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.68
SENS 0.68
PPV 0.69
TP 77
TN 83324
FP 51
FP CONTRA 8
FP INCONS 27
FP COMP 16
FN 36

^top


RNA 2D structure plot generated with R-Chie.