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Pknots 2D structure prediction for record 3J3D_C
REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE
Figure 1. Graph showing comparison of reference (upper part) and predicted by Pknots (lower part) secondary structures of RNA chain 3J3D_C.
Download Pknots input in FASTA format
Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.
| Base Pair Counts | |
|---|---|
| MCC | 0.46 |
| SENS | 0.53 |
| PPV | 0.42 |
| TP | 10 |
| TN | 944 |
| FP | 14 |
| FP CONTRA | 5 |
| FP INCONS | 9 |
| FP COMP | 0 |
| FN | 9 |
RNA 2D structure plot generated with R-Chie.