Molecule image

k2C

Summary

Full name2-lysidine
Short namek2C
New Nomenclature21C
RNAMods abbreviation}
Enzymes TilS (Escherichia coli)
TilS (Geobacillus kaustophilus)
Found in phylogenyEubacteria
Found in RNAtRNA
SMILESO=C(O)C(N)CCCCNC1N=C(N)C=CN1[C@@H]2O[C@H](CO)[C@H](O)C2O
SMILES (no stereochemical information)O=C(O)C(N)CCCCNC1N=C(N)C=CN1[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC15O6N5H25
Monoisotopic mass371.1805
Average mass371.3944
[M+H]+372.1883
Product ions240
Normalized LC elution time *1,14 (Kellner 2014)
LC elution order/characteristicsbetween G and A (Kellner 2014)

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.


LC-MS Publications

Title Authors Journal Details PubMed Id DOI
Profiling of RNA modifications by multiplexed stable isotope labelling. Kellner S, Neumann J, Rosenkranz D, Lebedeva S, Ketting RF, Zischler H, Schneider D, Helm M. Chem Commun (Camb). [details] 24567952 -

3D Molecule representation

Download [.mol file for k2C]

Chemical groups contained

TypeSubtype
aminoacyl grouplysyl

Reactions producing 2-lysidine

Name
C:k2C

Last modification of this entry: Oct. 6, 2017

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