Molecule image

nm5s2U

Summary

Full name5-aminomethyl-2-thiouridine
Short namenm5s2U
New Nomenclature2510U
RNAMods abbreviation
Enzymes MnmCD (Escherichia coli)
Mtu1 (Saccharomyces cerevisiae)
TrmU (Homo sapiens)
MnmE (Escherichia coli)
MnmE (Chlorobium tepidum)
MnmE (Nostoc sp.)
MnmE (Thermotoga maritima)
MnmG (Escherichia coli)
MnmG (Chlorobium tepidum)
MnmG (Aquifex aeolicus)
Found in phylogenyEubacteria, Eukaryota
Found in RNA
SMILESNCC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O
SMILES (no stereochemical information)NCC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC10O5N3H15S1
Monoisotopic mass289.0732
Average mass289.3111
[M+H]+290.081
Product ions158
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for nm5s2U]

Chemical groups contained

TypeSubtype
heavy atomsulfur
methyl groupmethyl at aromatic C
otherprimary amine

Reactions producing 5-aminomethyl-2-thiouridine

Name
cmnm5s2U:nm5s2U
nm5U:nm5s2U
s2U:nm5s2U

Reactions starting from 5-aminomethyl-2-thiouridine

Name
nm5s2U:nm5se2U
nm5s2U:mnm5s2U
nm5s2U:nm5ges2U
nm5s2U:inm5s2U

Last modification of this entry: Oct. 6, 2017

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