Molecule image

cm5s2U

Summary

Full name5-carboxymethyl-2-thiouridine
Short namecm5s2U
New Nomenclature2540U
RNAMods abbreviation
Enzymes
Found in phylogenyEukaryota
Found in RNA
SMILESO=C(O)CC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O
SMILES (no stereochemical information)O=C(O)CC1=CN(C(=S)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC11O7N2H14S1
Monoisotopic mass318.0522
Average mass318.306
[M+H]+319.06
Product ions187/169/141
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for cm5s2U]

Comments

This is an artificial substrate obtained by alkaline hydrolysis of mcm5s2U.

Chemical groups contained

TypeSubtype
heavy atomsulfur
othercarboxymethyl

Reactions starting from 5-carboxymethyl-2-thiouridine

Name
cm5s2U:mcm5s2U

Last modification of this entry: Oct. 6, 2017

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