Molecule image
Summary
| Full name | 5-carboxymethyluridine |
| Short name | cm5U |
| New Nomenclature | 52U |
| RNAMods abbreviation | ◊ |
| Enzymes | |
| Found in phylogeny | Eukaryota |
| Found in RNA | |
| PubChem ID | 3080720 |
| SMILES | C3(OC(CO)C(O)C(O)3)N1C=C(CC(=O)O)C(=O)NC1(=O) |
| SMILES (no stereochemical information) | C3(OC(CO)C(O)C(O)3)N1C=C(CC(=O)O)C(=O)NC1(=O) |
LC-MS Information
| Sum formula | C11O8N2H14 |
| Monoisotopic mass | 302.075 |
| Average mass | 302.241 |
| [M+H]+ | 303.0828 |
| Product ions | 171 |
| Normalized LC elution time * | not available |
| LC elution order/characteristics | not available |
* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.
LC-MS Publications
| Title | Authors | Journal | Details | ||
|---|---|---|---|---|---|
| Quantitative analysis of ribonucleoside modifications in tRNA by HPLC-coupled mass spectrometry. | Su D, Chan CT, Gu C, Lim KS, Chionh YH, McBee ME, Russell BS, Babu IR, Begley TJ, Dedon PC... | Nat Protoc | [details] | 24625781 | - |
3D Molecule representation
Download [.mol file for cm5U]
Chemical groups contained
| Type | Subtype |
|---|---|
| other | carboxymethyl |
Reactions producing 5-carboxymethyluridine
| Name |
|---|
| U:cm5U |
Reactions starting from 5-carboxymethyluridine
| Name |
|---|
| cm5U:mcm5U |
| cm5U:chm5U |
Last modification of this entry: Oct. 6, 2017