Molecule image

cnm5U

Summary

Full name5-cyanomethyluridine
Short namecnm5U
New Nomenclature55U
RNAMods abbreviationѶ
Enzymes
Found in phylogeny
Found in RNA
SMILESN#CCC1=CN(C(=O)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O
SMILES (no stereochemical information)N#CCC1=CN(C(=O)NC1=O)[C@@H]2O[C@H](CO)[C@H](O)C2O

LC-MS Information

Sum formulaC11H13N3O6
Monoisotopic mass283.0804
Average mass283.2408
[M+H]+284.0882
Product ions152
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for cnm5U]

Comments

Identified in mutant tRNAIle from Haloarcula marismortui. Present in total tRNAs from euryarchaea but not in crenarchaea, eubacteria, or eukaryotes.

Chemical groups contained

TypeSubtype
methyl groupmethyl at aromatic C
othercyano

Last modification of this entry: Oct. 6, 2017

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