Molecule image

ho5C

Summary

Full name5-hydroxycytidine
Short nameho5C
New Nomenclature50C
RNAMods abbreviationÇ
Enzymes
Found in phylogeny
Found in RNArRNA
SMILESNC1=NC(=O)N(C=C1O)C2OC(CO)C(O)C2O
SMILES (no stereochemical information)NC1=NC(=O)N(C=C1O)C2OC(CO)C(O)C2O

LC-MS Information

Sum formulaC9H13N3O6
Monoisotopic mass259.0804
Average mass259.2188
[M+H]+260.0877
Product ions128
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for ho5C]

Chemical groups contained

TypeSubtype
otherhydroxyl

Reactions producing 5-hydroxycytidine

Name
C:ho5C

Publications

Title Authors Journal Details PubMed Id DOI
Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA. Havelund JF, Giessing AM, Hansen T, Rasmussen A, Scott LG, Kirpekar F J Mol Biol [details] 21723290 -
A novel minimum ribozyme with oxidoreduction activity. Yanagawa H, Ogawa Y, Ueno M, Sasaki K, Sato T... Biochemistry [details] 2271669 -

Last modification of this entry: Oct. 6, 2017

Copyright © Genesilico - All rights reserved
If you have any advice or suggestions for corrections or improvements, please contact: Pietro Boccaletto