Molecule image

mnm5U

Summary

Full name5-methylaminomethyluridine
Short namemnm5U
New Nomenclature511U
RNAMods abbreviation{
Enzymes MnmCD (Escherichia coli)
MnmD (Aquifex aeolicus)
Found in phylogenyEubacteria, Eukaryota
Found in RNAtRNA
SMILESC3(OC(CO)C(O)C(O)3)N1C=C(CNC)C(=O)NC1(=O)
SMILES (no stereochemical information)C3(OC(CO)C(O)C(O)3)N1C=C(CNC)C(=O)NC1(=O)

LC-MS Information

Sum formulaC11O6N3H17
Monoisotopic mass287.1117
Average mass287.273
[M+H]+288.1195
Product ions156/239/257/125/209
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for mnm5U]

Chemical groups contained

TypeSubtype
methyl groupmethyl at aromatic C
othersecondary amine

Reactions producing 5-methylaminomethyluridine

Name
nm5U:mnm5U

Reactions starting from 5-methylaminomethyluridine

Name
mnm5U:mnm5s2U

Occurrence in PDB structures

PDB-ID chain residue
1xmo X MNU/34

Last modification of this entry: Oct. 6, 2017

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