Molecule image
Summary
| Full name | agmatidine |
| Short name | C+ |
| New Nomenclature | 20C |
| RNAMods abbreviation | ¿ |
| Enzymes |
TiaS (Archaeoglobus fulgidus) |
| Found in phylogeny | Archaea |
| Found in RNA | tRNA |
| SMILES | NC(=N)NCCCCNC1=NC(=N)C=CN1C2OC(CO)C(O)C2O |
| SMILES (no stereochemical information) | NC(=N)NCCCCNC1=NC(=N)C=CN1C2OC(CO)C(O)C2O |
LC-MS Information
| Sum formula | C14H25N7O4 |
| Monoisotopic mass | 355.1968 |
| Average mass | 355.3973 |
| [M+H]+ | 356.2046 |
| Product ions | 224 |
| Normalized LC elution time * | not available |
| LC elution order/characteristics | not available |
* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.
3D Molecule representation
Download [.mol file for C+]
Comments
alternative name: 2-agmatinylcytidine, alternative abbreviation: agmt
Reactions producing agmatidine
| Name |
|---|
| C:C+ |
Publications
| Title | Authors | Journal | Details | ||
|---|---|---|---|---|---|
| Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. | Mandal D, Kohrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Soll D, RajBhandary UL | Proc Natl Acad Sci U S A | [details] | 20133752 | - |
| Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. | Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T | Nat Chem Biol | [details] | 20139989 | - |
| The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome. | Voorhees RM, Mandal D, Neubauer C, Kohrer C, Rajbhandary UL, Ramakrishnan V... | Nat Struct Mol Biol | [details] | 23542153 | - |
Last modification of this entry: Oct. 6, 2017