Molecule image



Full nameagmatidine
Short nameC+
New Nomenclature20C
RNAMods abbreviation¿
Enzymes TiaS (Archaeoglobus fulgidus)
Found in phylogenyArchaea
Found in RNAtRNA
SMILES (no stereochemical information)NC(=N)NCCCCNC1=NC(=N)C=CN1C2OC(CO)C(O)C2O

LC-MS Information

Sum formulaC14H25N7O4
Monoisotopic mass355.1968
Average mass355.3973
Product ions224
Normalized LC elution time * not available
LC elution order/characteristics not available

* normalized to guanosine (G), measured with a RP C-18 column with acetonitrile/ammonium acetate as mobile phase.

3D Molecule representation

Download [.mol file for C+]


alternative name: 2-agmatinylcytidine, alternative abbreviation: agmt

Reactions producing agmatidine



Title Authors Journal Details PubMed Id DOI
Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine. Mandal D, Kohrer C, Su D, Russell SP, Krivos K, Castleberry CM, Blum P, Limbach PA, Soll D, RajBhandary UL Proc Natl Acad Sci U S A [details] 20133752 -
Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea. Ikeuchi Y, Kimura S, Numata T, Nakamura D, Yokogawa T, Ogata T, Wada T, Suzuki T, Suzuki T Nat Chem Biol [details] 20139989 -
The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome. Voorhees RM, Mandal D, Neubauer C, Kohrer C, Rajbhandary UL, Ramakrishnan V... Nat Struct Mol Biol [details] 23542153 -

Last modification of this entry: Oct. 6, 2017

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