mqaprna_env.sh loading... .. add pythonpath: /home/mqapRNA/mqaprna_env/mqapRNA .. add pythonpath: /home/mqapRNA/mqaprna_env mqaprna.py ver: v.0.5-5-gc914048-dirty start 2016-07-25 15:27:56 -------------------------- ---------------------------------------------------- Seq ss fn off Output csv /home/mqapRNA/mqapRNAweb/media/jobs//c17b2714-c0eb-4e6f-ad7e-990a7a040044/mqaprna_scores-v.0.5-5-gc914048-dirty.csv RNAkb 5pt Directory /home/mqapRNA/mqapRNAweb/media/jobs//c17b2714-c0eb-4e6f-ad7e-990a7a040044/input Model path /home/magnus/Dropbox/WORK_/mqaprna-papier/SVMlin.rda Multiprocessing on Ignore pdb fn off Methods ClashScore,AnalyzeGeometry,FARNA,SimRNA_0,RASP,FARNA_hires,RNAkb,RNAscore,eSCORE rmsd biopython_all Native pdb off RASP all -------------------------- ---------------------------------------------------- SSAgreement on to ignore 0 [] files to analyze: 1 ['/home/mqapRNA/mqapRNAweb/media/jobs//c17b2714-c0eb-4e6f-ad7e-990a7a040044/input/superimposed.pdb'] -------------------------------------------------------------------------------- csv: /home/mqapRNA/mqaprna_env/mqapRNA//home/mqapRNA/mqapRNAweb/media/jobs//c17b2714-c0eb-4e6f-ad7e-990a7a040044/mqaprna_scores-v.0.5-5-gc914048-dirty.csv JVM stdout: /tmp/tmpYC2SPJ/h2o_magnus_started_from_python.out JVM stderr: /tmp/tmpuxi66x/h2o_magnus_started_from_python.err Using ice_root: /tmp/tmpTvTCHJ Java Version: java version "1.7.0_101" OpenJDK Runtime Environment (IcedTea 2.6.6) (7u101-2.6.6-0ubuntu0.14.04.1) OpenJDK 64-Bit Server VM (build 24.95-b01, mixed mode) Starting H2O JVM and connecting: . Starting H2O JVM and connecting: .. Starting H2O JVM and connecting: ... Starting H2O JVM and connecting: .... Starting H2O JVM and connecting: ..... Starting H2O JVM and connecting: ...... Starting H2O JVM and connecting: ....... Starting H2O JVM and connecting: ........ Starting H2O JVM and connecting: ......... Starting H2O JVM and connecting: .......... Starting H2O JVM and connecting: ........... Starting H2O JVM and connecting: ............ Starting H2O JVM and connecting: ............. Starting H2O JVM and connecting: .............. Starting H2O JVM and connecting: ............... Starting H2O JVM and connecting: ................ Starting H2O JVM and connecting: ................. Starting H2O JVM and connecting: .................. Starting H2O JVM and connecting: ................... Starting H2O JVM and connecting: .................... Starting H2O JVM and connecting: ..................... Starting H2O JVM and connecting: ...................... Starting H2O JVM and connecting: ....................... Starting H2O JVM and connecting: ........................ Starting H2O JVM and connecting: ......................... Starting H2O JVM and connecting: .......................... Starting H2O JVM and connecting: ........................... Starting H2O JVM and connecting: ............................ Starting H2O JVM and connecting: ............................. Starting H2O JVM and connecting: .............................. Starting H2O JVM and connecting: ...............................fn: /home/mqapRNA/mqapRNAweb/media/jobs//c17b2714-c0eb-4e6f-ad7e-990a7a040044/input/superimposed.pdb [--------------------------------------------------------------------------------] 1 100.0 % 1 10 True superimposed.pdb {'AnalyzeGeometry': 94.2308, 'eSCORE': 0.46713, 'FARNA': ['-7.93', '-1.863', '-12.999', '-25.004', '-11.608', '-89.712', '13.378', '32.484', '-27.958', '-112.818', '0.0', '0.0', '18.392', '0.0'], 'ClashScore': 81.113085, 'length': 0, 'FARNA_hires': ['0.0', '-4.071', '-0.591', '0.0', '7.727', '11.841', '-128.074', '8.76', '-113.519', '1.588', '-47.201', '18.68', '-9.927', '108.198', '138.447'], 'SimRNA_0': ['0', '-30.824779', '-25.916', '6.584', '0.192', '-5.100565', '-18.321', '-5.626', '-6.825', '8.418', '17.254', '', '-30.824779'], 'RASP': ['-1.6175', '533', '-0.00303471', '8.22665', '2.99008', '-3.29226', '-2799.53', '32351', '-0.0865363', '-2586.75', '39.1616', '-5.43346', '-4960.02', '75384', '-0.0657967', '-4168.7', '80.164', '-9.87131', '-7713.39', '259606', '-0.0297119', '0', '0', '0'], 'RNAkb': -1, 'RNAscore': 29.9194} Successfully stopped H2O JVM started by the h2o python module.