mqaprna.py

  ver: v0.3-78-g98c214c-dirty

 Seq ss fn            off
 Output csv           out-v0.3-78-g98c214c-dirty.csv
 RNAkb                5pt
 Directory            input
 Model path           /home/magnus/Dropbox/WORK_/mqaprna-papier/SVMlin.rda
 Multiprocessing      on
 Ignore pdb fn        off
 Methods              ClashScore,AnalyzeGeometry,FARNA,SimRNA_0,RNAkb,RNAscore,RASP,eSCORE,FARNA_hires
 rmsd                 biopython_all
 Native pdb           off
 RASP                 all
 SSAgreement          on
 to ignore 0 []
 files to analyze: 3 ['input/Puzz_2.pdb', 'input/Puzz_3.pdb', 'input/Puzz_1.pdb']
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input:  input/Puzz_2.pdb
[+++       ]   1 33.33 % 3 Puzz_2.pdb                                         0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57
input:  input/Puzz_1.pdb
[++++++    ]   2 66.67 % 3 Puzz_1.pdb                                         0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57
input:  input/Puzz_3.pdb
[++++++++++]   3 100.0 % 3 Puzz_3.pdb                                         0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57 0.0,-377.577,-2.928,0.0,2.338,12.749,-344.203,8.679,-191.375,2.563,-106.05,22.847,-11.455,192.688,36.57

Cmd: mqaprna.py -m 6 input out
Execution time: 0:03:03.422 process: 6 start: 20:35:34 end: 20:38:37  
Output: out-v0.3-78-g98c214c-dirty.csv 

logging: out-v0.3-78-g98c214c-dirty.log