CompaRNA - on-line benchmarks of RNA structure prediction methods
Home
Methods
Datasets
Rankings
RNA 2D Atlas
Help
FAQ
Contact us
RSS feeds
Twitter
RNA Secondary Structure Atlas - PDB -
GP_knot1
RNA:
2LC8_A
GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
Reference structure (std)
[ sec struct ]
.(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
Reference structure (ext)
[ sec struct ]
.((((((((((((({{{{{.[)))).))))).))).............])}}}}}.
( )
Afold
[ FASTA input ]
[ sec struct ]
((((.((((((((........)))).))))..)))..(((((......)))))..)
Alterna
[ FASTA input ]
[ sec struct ]
.((..((((((((........)))).)))).......(((((......))))))).
CRWrnafold
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
Carnac(seed)
[ FASTA input ]
[ sec struct ]
.....((((.................))))..........................
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
........................................................
CentroidFold (ext)
[ FASTA input ]
[ sec struct ]
..............(((((((...(......((.....)).......)))))))).
CentroidFold
[ FASTA input ]
[ sec struct ]
..............(((((((...(......((.....)).......)))))))).
CentroidHomfold‑LAST
[ FASTA input ]
[ sec struct ]
..((((((............))))))...........(((((......)))))...
ContextFold
[ FASTA input ]
[ sec struct ]
.(((.((((((((........))))).)))..)))..(((((.......)))))..
Contrafold
[ FASTA input ]
[ sec struct ]
..............(((((((...((....(((.....))).....))))))))).
Cylofold
[ FASTA input ]
[ sec struct ]
....(((((((((.[[[[[[[)))))...........)))).......]]]]]]].
Fold
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
HotKnots
[ FASTA input ]
[ sec struct ]
.(((.((((((((........)))).))))..)))..(((((......)))))...
IPknot
[ FASTA input ]
[ sec struct ]
.....(((..(((.....[[[))){{.)))................}}...]]]..
MCFold
[ FASTA input ]
[ sec struct ]
..((.((((((((.(....).)))).)))).)).(..(((((.(..).)))))..)
MCFold (ext)
[ FASTA input ]
[ sec struct ]
.(((((((((((((((..))))))).))))))))((((((((((..))))))))))
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
((...((((.....))))))......((((.......((.....)).....)))).
Mastr(seed)
[ FASTA input ]
[ sec struct ]
........................................................
MaxExpect
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
McQFold
[ FASTA input ]
[ sec struct ]
....(((((((((.[[[[[[[))))...........))))).......]]]]]]].
Multilign(seed)
[ FASTA input ]
[ sec struct ]
.....((((.....)))).(((((......(((.....)))........)))))..
Murlet(seed)
[ FASTA input ]
[ sec struct ]
..((((((...((....)).))))))...........((((........))))...
NanoFolder
[ FASTA input ]
[ sec struct ]
(((.{{{{{((((.[[[[[[[)))).)))...(((.}}}}}....)))]]]]]]].
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
...(........)..((((((((((....))))...............))))))..
PPfold(seed)
[ FASTA input ]
[ sec struct ]
...............((((((((........))...............))))))..
Pknots
[ FASTA input ]
[ sec struct ]
.....((((((((.[[[[[[[)))).))))(((.....))).......]]]]]]].
PknotsRG
[ FASTA input ]
[ sec struct ]
........(((((.[[[[[[[)))))....(((.....))).......]]]]]]].
ProbKnot
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
RDfolder
[ FASTA input ]
[ sec struct ]
.....(((.......)))((((((((....(((.....))).....))))))))..
RNASLOpt
[ FASTA input ]
[ sec struct ]
..............(((((((((((....))))...............))))))).
RNASampler(seed)
[ FASTA input ]
[ sec struct ]
..(((((((.....)))).....)))...........(((........))).....
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
..((((((...((....)).))))))...........((((........))))...
RNAfold
[ FASTA input ]
[ sec struct ]
.(((.((((((((........)))).))))..)))..(((((......)))))...
RNAshapes
[ FASTA input ]
[ sec struct ]
.(((.((((((((........)))).))))..)))..(((((......)))))...
RNAsubopt
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
..((((((((((((......)))))).)))).))..((((((......))))))..
RNAwolf
[ FASTA input ]
[ sec struct ]
..((.(((((((((......)))))).)))..))..(((((........)))))..
RSpredict(seed)
[ FASTA input ]
[ sec struct ]
..((((((...((....)).))))))........(..((((.......))))...)
Sfold
[ FASTA input ]
[ sec struct ]
.....(((.((((........))))..))).......(((((......)))))...
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
UNAFold
[ FASTA input ]
[ sec struct ]
.....((((.....))))((((((((....(((.....))).....))))))))..
Vsfold4
[ FASTA input ]
[ sec struct ]
.....((((.....))))...((((....))))....(((((......)))))...
Vsfold5
[ FASTA input ]
[ sec struct ]
.....((((.....))))...((((....))))....(((((......)))))...
^top
Copyright© - Adam Mickiewicz University & IIMCB - All rights reserved