CompaRNA - on-line benchmarks of RNA structure prediction methods
Home
Methods
Datasets
Rankings
RNA 2D Atlas
Help
FAQ
Contact us
RSS feeds
Twitter
RNA Secondary Structure Atlas - PDB -
Hammerhead_3
RNA:
5DI4_A
GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA
Reference structure (std)
[ sec struct ]
...............(....).(((((......)))))..........
Reference structure (ext)
[ sec struct ]
.........(.....(....)[[[[[[[)..].]]]]]].........
CMfinder(20)
[ FASTA input ]
[ sec struct ]
......................(((((......)))))..........
Carnac(seed)
[ FASTA input ]
[ sec struct ]
((((..................(((((......))))).....)))).
Carnac(20)
[ FASTA input ]
[ sec struct ]
((((..................(((((......))))).....)))).
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
.((((((..)))))).......((((........))))..........
CentroidAlifold(20)
[ FASTA input ]
[ sec struct ]
(.((((....))))........(((((......))))).........)
CentroidFold (ext)
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
CentroidFold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
ContextFold
[ FASTA input ]
[ sec struct ]
((((.......((((.(((....))).))))............)))).
Contrafold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
DAFS(seed)
[ FASTA input ]
[ sec struct ]
(((((((...))..........(((((......))))).....)))))
DAFS(20)
[ FASTA input ]
[ sec struct ]
(((((((...)...........(((((......)))))....))))))
DotKnot
[ FASTA input ]
[ sec struct ]
((((.......((((.......[[[[[))))..]]]]].....)))).
Fold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
HotKnots
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
IPknot
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
((((.((...............(((((......)))))...)))))).
MXScarna(20)
[ FASTA input ]
[ sec struct ]
((((.((...............(((((......)))))...)))))).
Mastr(seed)
[ FASTA input ]
[ sec struct ]
................................................
Mastr(20)
[ FASTA input ]
[ sec struct ]
((((((....))..........(((((......))))).....)))).
MaxExpect
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
McQFold
[ FASTA input ]
[ sec struct ]
((((......))))........((((([[[[..)))))......]]]]
Multilign(seed)
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
Multilign(20)
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
Murlet(seed)
[ FASTA input ]
[ sec struct ]
................................................
Murlet(20)
[ FASTA input ]
[ sec struct ]
(((((((...)...........(((((......)))))....))))))
NanoFolder
[ FASTA input ]
[ sec struct ]
((((..(((..[[[[.)))...{{{{{]]]]..}}}}}.....)))).
PETfold_2.0(seed)
[ FASTA input ]
[ sec struct ]
((((((....)))))(....).(((((......))))).........)
PETfold_2.0(20)
[ FASTA input ]
[ sec struct ]
(.((((....))))........(((((......))))).........)
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
((((((....)))))(....).(((((......))))).........)
PETfold_pre2.0(20)
[ FASTA input ]
[ sec struct ]
(.((((....))))........(((((......))))).........)
PPfold(seed)
[ FASTA input ]
[ sec struct ]
.(((((....)))))(....).((((........))))..........
PPfold(20)
[ FASTA input ]
[ sec struct ]
(.((((....))))........(((((......))))).........)
Pknots
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
PknotsRG
[ FASTA input ]
[ sec struct ]
((((......))))........(((((.[[[..)))))......]]].
ProbKnot
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
RDfolder
[ FASTA input ]
[ sec struct ]
(((........)))........(((((......)))))..........
RNASLOpt
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
RNASampler(seed)
[ FASTA input ]
[ sec struct ]
................................................
RNASampler(20)
[ FASTA input ]
[ sec struct ]
((((..(((.......)))...(((((......))))).....)))).
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
.((((((..))))))........(((........)))...........
RNAalifold(20)
[ FASTA input ]
[ sec struct ]
(.(((((..)))))........(((((......))))).........)
RNAfold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
RNAshapes
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
RNAsubopt
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
((((......))))((((..))))...((((((........)).))))
RNAwolf
[ FASTA input ]
[ sec struct ]
((((......))))(((....)))...((((.............))))
Sfold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
TurboFold(20)
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
UNAFold
[ FASTA input ]
[ sec struct ]
((((......))))........(((((......)))))..........
Vsfold4
[ FASTA input ]
[ sec struct ]
((((..(((..........)))(((((......))))).....)))).
Vsfold5
[ FASTA input ]
[ sec struct ]
((((......))))........((((([[[[..)))))......]]]]
^top
Copyright© - Adam Mickiewicz University & IIMCB - All rights reserved