CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB -
U6
RNA:
3JB9_N
GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA
Reference structure (std)
[ sec struct ]
.(........)........................................(..((((.....)))..).)...................
Reference structure (ext)
[ sec struct ]
((((....))))...........................((.....))(.[[[.[(((.....))).)]]]]..................
CMfinder(20)
[ FASTA input ]
[ sec struct ]
.(((....))).............(((........))).........((.((...(((.....)))....))..))..............
Carnac(seed)
[ FASTA input ]
[ sec struct ]
..........................................................................................
Carnac(20)
[ FASTA input ]
[ sec struct ]
((((....))))..............................................................................
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
((((....))))...........................................((.......))........................
CentroidAlifold(20)
[ FASTA input ]
[ sec struct ]
((((....))))...........................................((.......))........................
CentroidFold (ext)
[ FASTA input ]
[ sec struct ]
.((((((................................)))))).............................................
CentroidFold
[ FASTA input ]
[ sec struct ]
(((((((................................))))))).((......(((.....)))........))..............
ContextFold
[ FASTA input ]
[ sec struct ]
.(((....))).(..................................(((..(.((........))....)..)))....((....))).
Contrafold
[ FASTA input ]
[ sec struct ]
(((((((...((...................))......))))))).(((.(...(((.....)))....)..)))..............
DAFS(seed)
[ FASTA input ]
[ sec struct ]
(((..((.....))..)))................................(...(((.....)))....)...................
DAFS(20)
[ FASTA input ]
[ sec struct ]
((((....)))..).................................((.((...(((.....)))....))..))..............
DotKnot
[ FASTA input ]
[ sec struct ]
((((....)))).(((((.................))))).......(((.....(((.....))).......)))..............
Fold
[ FASTA input ]
[ sec struct ]
(((((((.(((((...)))))...(((........))).))))))).(((((...(((.....)))....)).)))..............
HotKnots
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).)))..............
IPknot
[ FASTA input ]
[ sec struct ]
((((....))))...................................(((((...(((.....)))....)).)))..............
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
(..........).......................((..(((...(.((.(....(((.....))).....).).)..)))).)).....
MXScarna(20)
[ FASTA input ]
[ sec struct ]
((((....))))........((.............((.....(((((((.((...(((.....)))....))..))).)))).))..)).
Mastr(seed)
[ FASTA input ]
[ sec struct ]
..........................................................................................
Mastr(20)
[ FASTA input ]
[ sec struct ]
((((....))))............((....((...............(..((...(((.....)))....)).)...........))).)
MaxExpect
[ FASTA input ]
[ sec struct ]
(((((((.(((((...)))))....(.....).......))))))).(((((...(((.....)))....)).)))..............
McQFold
[ FASTA input ]
[ sec struct ]
(((((((.(((((...)))))..................)))))))...........((((............)))).............
Multilign(seed)
[ FASTA input ]
[ sec struct ]
.......................................................((.......))........................
Multilign(20)
[ FASTA input ]
[ sec struct ]
((((....))))...................................(((((...(((.....)))....)).)))..............
Murlet(seed)
[ FASTA input ]
[ sec struct ]
...............................................(((.......)))..............................
Murlet(20)
[ FASTA input ]
[ sec struct ]
...((((................................))))....(((.(...).)))..............................
NanoFolder
[ FASTA input ]
[ sec struct ]
((((((([[.{{{{{{{{{{{{.((((...)))).....)))))))....}}}}}]]<<<<.}}}}aaa....>>>>.AAA}}}......
PETfold_2.0(seed)
[ FASTA input ]
[ sec struct ]
((((....)))).......................(...)..(.....).(.(.((((.....)))..).))..................
PETfold_2.0(20)
[ FASTA input ]
[ sec struct ]
((((....))))..................(................((...)).(((.....)))....(.............)....)
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
((((....)))).......................(...)..(.....).(.(.((((.....)))..).))..................
PETfold_pre2.0(20)
[ FASTA input ]
[ sec struct ]
((((....))))..................(................((...)).(((.....)))....(.............)....)
PPfold(seed)
[ FASTA input ]
[ sec struct ]
..........................................................................................
PPfold(20)
[ FASTA input ]
[ sec struct ]
((((....))))...................................((...)).(((.....)))........................
Pknots
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))[[[.)).)))..]]](....)...
PknotsRG
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).)))..............
ProbKnot
[ FASTA input ]
[ sec struct ]
(((((((.(((((...)))))..(((.....))).....))))))).(((((...(((.....)))....)).)))..............
RDfolder
[ FASTA input ]
[ sec struct ]
.......................................................(((.....)))........................
RNASLOpt
[ FASTA input ]
[ sec struct ]
(((((((.(((((...)))))..((((...)))).....)))))))...........((((............)))).............
RNASampler(20)
[ FASTA input ]
[ sec struct ]
((((....))))..............................(((...(((...............)))..........)))........
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
...............................................(((.......)))..............................
RNAalifold(20)
[ FASTA input ]
[ sec struct ]
...............................................(((.(....))))..............................
RNAfold
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).)))..............
RNAshapes
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).)))..............
RNAsubopt
[ FASTA input ]
[ sec struct ]
((((....)))).(((..(((...(((........))).........(((((...(((.....)))....)).))))))...))).....
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
..((((((..((((((((..))))))))..)))..(((...................((((......)).)))))((......)))))..
RNAwolf
[ FASTA input ]
[ sec struct ]
..((((((..(((.((((..)))).)))..)))..(((...................((((......)).)))))(........))))..
Sfold
[ FASTA input ]
[ sec struct ]
((((....))))...................................(((((...(((.....)))....)).)))..............
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
((((....))))...................................(((((...(((.....)))....)).)))..............
TurboFold(20)
[ FASTA input ]
[ sec struct ]
((((....))))...................................(((((...(((.....)))....)).)))..............
UNAFold
[ FASTA input ]
[ sec struct ]
((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).)))..............
Vsfold4
[ FASTA input ]
[ sec struct ]
.(((....)))..(((.(((((............................)))))..((((............)))).......)))...
Vsfold5
[ FASTA input ]
[ sec struct ]
((((....)))).(((.(((((............................)))))..((((............)))).......)))...
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