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RNA Secondary Structure Atlas - PDB - crcB
RNA: 4ENB_A
| GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG | |||
| Reference structure (std) | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| Reference structure (ext) | [ sec struct ] |
{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| Afold | [ FASTA input ] | [ sec struct ] | (.....((((((....((....(((((....)))))))..))))))....) |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ......((((((....((....(((((....)))))))..))))))..... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((........))))......((((......))))............... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ......((((((..........(((........)))....))))))..... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ......((((((........(.(((((....))))).)..))))))..... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((........))))......(((((....)))))............... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ......((((((........(.(((((....))))).)..))))))..... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... |
| Fold | [ FASTA input ] | [ sec struct ] | (((......))).(((.(....(((((....)))))...))))........ |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... |
| IPknot | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| MCFold | [ FASTA input ] | [ sec struct ] | ..((..((((((......(.(.(((((....))))).).)))))))..).) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ..((((((((((......((((((((((..))))))))))))))))))).) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(.((......)))........(((((....)))))............... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .......................((..(....)))................ |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ................................................... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .......(((................................)))...... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | (((......)))...(((....(((((....)))))...)))......... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ......((((((............................))))))..... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ((((........))))................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .(..(.(((((....(..((..(((........))))..)))))))).).. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(....((((((..........((..........))....))))))..).. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | (.....(((((...........((..........)).....)))))..).. |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))((....(((((....)))))))..]]]]]]..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....(((((((..........(((((....)))))....)))))).)... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ......((((((.((((...............))))....))))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((........))))......(((........)))............... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ......((((((............................))))))..... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ((((........))))................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ......((((((....((....(((((....)))))))..))))))..... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ......((((((....((....(((((....)))))))..))))))..... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ......((((((....((....(((((....)))))))..))))))..... |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ......((((((.((((...(......)....))))....))))))..... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ......(((((((((((((((......)))).))))..).))))))..... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((....(((..................................)))..)). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((....((((((............................))))))..)). |
| Sfold | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((........))))......(((((....)))))............... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((........))))......(((((....)))))............... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ......((((((....((....(((((....)))))))..))))))..... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ......((((((..........(((((....)))))....))))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... |
RNA: 4ENC_A
| GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG | |||
| Reference structure (std) | [ sec struct ] | .((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| Reference structure (ext) | [ sec struct ] |
.{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .......((((((....((....(((((....)))))))..))))))..... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .((((........))))......((((......))))............... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .((((........))))......(((........)))............... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | .......((((((........(.(((((....))))).)..))))))..... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .......((((((........(.(((((....))))).)..))))))..... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .......((((((..........(((((....)))))....))))))..... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((........))))).....(((((....)))))............... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .......((((((........(.(((((....))))).)..))))))..... |
| Cylofold | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |
| Fold | [ FASTA input ] | [ sec struct ] | ((((......))))(((.(....(((((....)))))...))))........ |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((...[[[)))).........(((((....))))).......]]]..... |
| MCFold | [ FASTA input ] | [ sec struct ] | ((..((.(.(((..)))(.(.(.(((((....))))).).).)).))..)). |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((.(((..)))((((((((((((..)))))))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | (((.((......)))).).....(((((....)))))............... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((........))))......(((........)))............... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .................................................... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ........((.............(((........))).......))...... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((......))))(((.(....(((((....)))))...))))........ |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | (((((........))))).....(((((....)))))............... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .......((((((............................))))))..... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .......(((((..............................)))))..... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | (((({(([[[[[[)}))).....(((((....)))))(())]]]]]]))... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(..(.(((((....(..((..(((........))))..)))))))).).. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ..(....(((((.(.(.......(((........))).)..))))))..).. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .......(((((.(.(.......(((........))).)..))))))..... |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((...[[[))))(((.(....(((((....)))))...))))]]]..... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .......((((((.((((...............))))....))))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((........))))).....(((((....)))))............... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .......((((((..........(((((....)))))....))))))..... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .......((((((............................))))))..... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .......((((((............................))))))..... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((......))))..(((....(((((....)))))...)))......... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((......))))..(((....(((((....)))))...)))......... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((......))))(((......(((((....)))))....)))........ |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ((((.....).)))(.(((....(((((....)))))...))))(......) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((...)).)))(.(((....((((((..))))))...))))(......) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .((....(((..................................)))..)). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .((....((((((..............(.....).......))))))..)). |
| Sfold | [ FASTA input ] | [ sec struct ] | .......................(((((....)))))............... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | (((((........))))).....(((((....)))))............... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | (((((........))))).....(((((....)))))............... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((......))))..(((....(((((....)))))...)))......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .((((........))))......(((((....)))))............... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((..[[[[[[))))).....(((((....)))))....]]]]]]..... |