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RNA Secondary Structure Atlas - PDB - mir-TAR
RNA: 2KDQ_B
| GGCAGAUCUGAGCCUGGGAGCUCUCUGCC | |||
| Reference structure (std) | [ sec struct ] | ((((((...((((......)))))))))) | |
| Reference structure (ext) | [ sec struct ] |
(((((([..(]((......)).))))))) ( ) |
|
| Afold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((.................)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| MCFold | [ FASTA input ] | [ sec struct ] | ((((((...(((((...).)))))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((...(((((...).)))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ............................. |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ..........(((......)))....... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(.......((((......))))....). |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ..........(((......)))....... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .........((((......))))...... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .((((....((((......)))).)))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .((((....((((......)))).)))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((....((((......)))).))))) |