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RNA Secondary Structure Atlas - PDB - pfl
RNA: 4XW7_A
| GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA | |||
| Reference structure (std) | [ sec struct ] | (((((((..((........(((((....))))).))..)))))))(((((.........))))) | |
| Reference structure (ext) | [ sec struct ] | ((((((((((((......[[[[[[...)]]]]]])))))))))))(((((.........))))) | |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ...........((((.....((((....)))).....................))))....... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....)))))))................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | (((((((..(....)....(((((....))))).....)))))))..(((.........))).. |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | (((((((..(....)....(((((....))))).....)))))))..(((.........))).. |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((........(((((....))))).))))))))))).(...((((....))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).(...((((....))))). |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....))))))).....((((....)))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..)))))))((...((((....)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...................(((((....)))))............................... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .....((..(.(((((....((((....))))(.....).............))))).).)).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((((((....[[[[....(((((....))))).....)))))))....]]]]........... |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).....((((....)))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((((..(((.....).(((((....))))).))..))))))).....((((....)))).. |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).....((((....)))).. |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....)))))))(((((.........))))) |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | (((((((..(.........(((((....))))).)...)))))))(((((.........))))) |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ...........(((((...(((((....)))))...................)))))....... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).....((((....)))).. |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((....[[[[....(((((....))))).....))))))){{{{{...]]]]..}}}}} |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((.((((..((((....(((((....)))))......)).)).)))).)))).......... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ...((((..(.........................)..)))).....(((.........))).. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | (((((((...[[[[[[.{{{{{{{{...<<.((..)).)))))))]]]]]]}}}}}}}}>>... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((...(..(.....(((((....)))))..).))))))))..((((.....)..))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | (((((((..(.........(((((....)))))..)..))))))).((((.........)))). |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((...(..(.....(((((....)))))..).))))))))..((((.....)..))).. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | (((((((..(.........(((((....)))))..)..))))))).((((.........)))). |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((((...((..(.....(((((....)))))..).)))))))).((((.........)))). |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((((...((.....))(((((....)))))..[[.)))))))...]]((((....)))).. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..)))))))..((.[[[[))..]]]].. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....))))))).....((((....)))).. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((.............(((((....)))))......))))))(((((.........))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....))))))).....((((....)))).. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | (((((((............(((((....))))).....)))))))(((((.........))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | (((((((..(....)....(((((....))))).....))))))).........((....)).. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | (((((((..(....)....(((((....))))).....)))))))..(((.........))).. |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((((((..(((.....).(((((....))))).))..))))))).....((((....)))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).....((((....)))).. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((((((..(((.....).(((((....))))).))..))))))).....((((....)))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((..(..)..(((.((((((..)))))))))..)))))))(((((.(......)))))) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | (((((((..(..)...((.(((((....)))))))...)))))))(((((.(......)))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | (((((((..(((.....).(((((....))))).))..))))))).....((((....)))).. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | (((((((..((........(((((....))))).))..))))))).((((.........)))). |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | (((((((..(.........(((((....)))))..)..))))))).((((.........)))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((((..(((.....).(((((....))))).))..))))))).....((((....)))).. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...((((.....))))...(((((....))))).(((.....))).....((((....)))).. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((((.....))))...(((((....)))))((((.....))))....[[[[.)))]]]].. |
RNA: 4ZNP_A
| GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC | |||
| Reference structure (std) | [ sec struct ] | .((((((((..(.[[[[[....((((....))))..)..))))))))........{{{..]]]]]..}}}... | |
| Reference structure (ext) | [ sec struct ] |
(((((((((((((([{{{....{{{{...)}}}}.))))))))))))).......<<<.]}}}....>>>... ( ) ( ) |
|
| Afold | [ FASTA input ] | [ sec struct ] | ((....((((.(.(((((....((((....)))).((((.....))))........))).)))))))....)) |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .((.(....).))(((((....((((....))))..........................)))))........ |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ......................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....)))))))).......................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ..(((((((..(....).....((((....)))).....))))))).........(((.........)))... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ..(((((((.............((((....)))).....))))))).........(((.........)))... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | .(((((((((............((((....))))....)))))))))........(((.........)))... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .((((((((..(...(......((((....)))))..).))))))))........(((.........)))... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((..(.((((..((((((.(..((((....))))..(((.....))).......).))).))))))).)..)) |
| Contrafold | [ FASTA input ] | [ sec struct ] | .((((((((..((.((......((((....)))))))).))))))))........(((.......())))... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .............((((....(((((....))))).(...)....................))))........ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .((((((((..(....).....((((....)))).....))))))))........(((.........)))... |
| DotKnot | [ FASTA input ] | [ sec struct ] | .((((((((....[[[[[....((((....)))).....)))))))).............]]]]]........ |
| Fold | [ FASTA input ] | [ sec struct ] | .((((((((.....((......((((....))))))...))))))))........(((.........)))... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .((((((((....[[[[[....((((....)))).....))))))))........{{{..]]]]]..}}}... |
| IPknot | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....))))))))........(((.........)))... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....))))))).)......((((.........)))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((((((..((.........((((....))))).)..))))))))........(((.(.....).)))... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ......................................................................... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .......................(((....)))......................(((.........)))... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .((((((((......(......((((....)))))....))))))))........(((.........)))... |
| McQFold | [ FASTA input ] | [ sec struct ] | .((((((((....[[[[[....((((....)))).....))))))))........{{{..]]]]]..}}}... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .((((((((..((.........((((....))))..)).))))))))........(((.........)))... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ...((((((..(....).....((((....)))).....))))))..........(((.(.....).)))... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .((((((((.((.[[[[[.[[.((((....))))))...))))))))]]......{{{<<]]]]]..}}}.>> |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..((((((...((..(......((((....))))..).)))))))).........((((.....)..)))... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.........)))... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((((((...(..(......((((....))))..).)))))))).........((((.....)..)))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.........)))... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ......................................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.........)))... |
| Pknots | [ FASTA input ] | [ sec struct ] | .((((((((..[[[[[[[....((((....)))).[[[.)))))))).........]]].]]]]].]]..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .((((((((...[[[[......((((....)))).....))))))))........]]]]...((....))... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((((((((..((.((......((((....)))))))).))))))))........(((.........)))... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .((((((((...(((...............)))......))))))))........(((.........)))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....)))))))).......................... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....))))))))........(((.........)))... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ..(((((((..(....).....((((....)))).....)))))))................((....))... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ..(((((((..(....).....((((....)))).....))))))).........(((.........)))... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ......((((...(((((....((((....)))).((((.....))))........))).)).))))...... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((((((..(.(((..)).)(((((..)))))....)))))))))((.((((((........)))))).)) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | .((((((((....(.......)((((....)))).....))))))))((..(((((........)))))..)) |
| Sfold | [ FASTA input ] | [ sec struct ] | .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....))))))))........(((.........)))... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .((((((((.............((((....)))).....))))))))........(((.........)))... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ......((((..((((((....((((....)))).((((.....))))........))).)))))))...... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ......((((..((((......((((....)))).((((.....)))).......))))....))))...... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....(((((....[[[[[....((((....)))).[[[[)))))]]]]............]]]]]........ |