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RNA Secondary Structure Atlas - PDB - preQ1-II
RNA: 2MIY_A
| GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA | |||
| Reference structure (std) | [ sec struct ] | ((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]].. | |
| Reference structure (ext) | [ sec struct ] |
((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>.. ( ) ( ) |
|
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .............(((((((.................((((....)))).))))))).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .....................................((((....)))).......... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((..........))))))))).........((((....)))).......... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ..((((((...((...))..))))))..........(((((....)))))......... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((((((...((...))..)))))))..........((((....)))).......... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((.....[[[[[[[)))))))).........((((....)))).]]]]]]].. |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ..((((((............))))))...........((((....)))).......... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((((..[[.{{{{{{{)))))))).{{{]]...<<<<}}}.>>>>.}}}}}}}.. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....))))(....).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((((......[[[[[[)))))))).........((((....))))..]]]]]].. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ((((((((.(.......)..))))))))...(((........))).............. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((.......)).))))))))...(((........)))((........).). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((((...((...))..)))))))).........((((....)))).......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((((............)))))))..........((((....)))).......... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((((............)))))))).........((((....)))).......... |
RNA: 4JF2_A
| GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA | |||
| Reference structure (std) | [ sec struct ] | (((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]].. | |
| Reference structure (ext) | [ sec struct ] |
((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>.. ( ) ( ) ( ) |
|
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | (((((........)))))...(((((((............)))))))........((((....))))......... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((((....)))))))...............(((((((....((((.............))))...))))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.....[[[[[[[[[))))))))......((((....))))]]]]]]]]] |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((........[[[[[.))))))))......((((....)))).]]]]]... |
| MCFold | [ FASTA input ] | [ sec struct ] | (((((((....)))))))..(((((((.(..(.....)..))))))))((.((..(((((..)))))..)).)).. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((..))))))))..(((((((.(((((...))))))))))))((((((((((((..)))))))))))).. |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((.........(....)...((((((...((...))..)))))).)))......((((..)))).......... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ...........(((((...)))))...............................(((......)))......... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.....[[[[[[[[[))))))))......(((((..)))))]]]]]]]]] |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....................(.((((((............))))))...........(((()))).......)... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((([[[[))))))).((((((({...((<<<<<<<<<)}))))))))]]..(((((]])))))>>>>>>>>> |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((........)))))...(((((((............)))))))........((((....))))......... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | (((((........)))))...(((((((............)))))))........((((....))))......... |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.....[[[[[[[[[))))))))......((((....))))]]]]]]]]] |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.....[[[[[[[[[))))))))........((....))..]]]]]]]]] |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.....[[[[[....))))))))......((((....))))....]]]]] |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....................((((((..............))))))........((((....))))......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((((............)))))))........((((....))))......... |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.(...........)))))))))......((((....))))......... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((((((....)))))))..............(((((((((......((....))((((....))))))))))))) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | (((((((....)))))))..............(((((((((..............((((....))))))))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((((..))))))))..(....)......(((((((((..............(((((..)))))))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ...................(..............).......((............)).(...)............ |
| Sfold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..(((((....)))))(((.(((((((..............))))))).......((((....))))....))).. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((((....))))))).((((((((.......[[[[[[[))))))))......((((....))))]]]]]]].. |