CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB -
snoPyro_CD
RNA:
4BY9_A
GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
Reference structure (std)
[ sec struct ]
((((((....................(...((((....))))......).................))))))
Reference structure (ext)
[ sec struct ]
((((((...((((.............(((((((((..)))))...)))).............))))))))))
( )
Afold
[ FASTA input ]
[ sec struct ]
((((((........................((((....)))).......(((.........)))..))))))
CMfinder(seed)
[ FASTA input ]
[ sec struct ]
..........................(.(..(((.........((.....))))..).....).).......
Carnac(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
CentroidFold (ext)
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
CentroidFold
[ FASTA input ]
[ sec struct ]
((((((........((.....((.......((((....))))........)).....)).......))))))
CentroidHomfold‑LAST
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
ContextFold
[ FASTA input ]
[ sec struct ]
((((((........((.....))..(((..((((....)))).......)))..............))))))
Contrafold
[ FASTA input ]
[ sec struct ]
((((((........((.....((.......((((....))))........)).....)).......))))))
DAFS(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
DotKnot
[ FASTA input ]
[ sec struct ]
.............(((..[[[[[..)))..]]]]]..............(((...[[[[..)))..]]]]..
Fold
[ FASTA input ]
[ sec struct ]
((((((........((.....((.......((((....))))........)).....)).......))))))
HotKnots
[ FASTA input ]
[ sec struct ]
((((((.......(((.........)))..((((....))))........................))))))
IPknot
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
MCFold (ext)
[ FASTA input ]
[ sec struct ]
.((((((((((((((((((((((((((...)))))))).))))))))))))))))))((((((...))))))
MCFold
[ FASTA input ]
[ sec struct ]
.(.(.((.(.((.(.((.(...(((.(...).)))....).)).).)).).)).).)((((.(...).))))
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
.((..................................................................)).
Mastr(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
MaxExpect
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
McQFold
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
Multilign(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
Murlet(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
NanoFolder
[ FASTA input ]
[ sec struct ]
((..[[.{{.{{..)).<<..aa....bbbbbbbb.....]].}}.}}..bb.>>..AA..BBBBBBBBBB.
PETfold_2.0(seed)
[ FASTA input ]
[ sec struct ]
.((....((...(.............)...................))(.............)......)).
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
.((....((.(((.............)................)).))(.............)......)).
PPfold(seed)
[ FASTA input ]
[ sec struct ]
.((.........(.............).....................(.............)......)).
Pknots
[ FASTA input ]
[ sec struct ]
((((((.((.....))..(((.....))).((((....)))).((.....))..(((.....))).))))))
PknotsRG
[ FASTA input ]
[ sec struct ]
((((((.......(((.........)))..((((....))))........................))))))
ProbKnot
[ FASTA input ]
[ sec struct ]
((((((............(((.....))).((((....))))............(((.....))).))))))
RDfolder
[ FASTA input ]
[ sec struct ]
.(((((.......(((.........)))..)))))......................((((.......))))
RNASLOpt
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
RNASampler(seed)
[ FASTA input ]
[ sec struct ]
.............(((..............((((....))))...................)))........
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
........................................................................
RNAfold
[ FASTA input ]
[ sec struct ]
((((((.......(((.........)))..((((....))))........................))))))
RNAshapes
[ FASTA input ]
[ sec struct ]
((((((.......(((.........)))..((((....))))........................))))))
RNAsubopt
[ FASTA input ]
[ sec struct ]
((((((........................((((....)))).....(.(((.........))).)))))))
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
((((((........)).((......))..((((((..)))((........)).((......))..)))))))
RNAwolf
[ FASTA input ]
[ sec struct ]
((((((........))................((....))((........))................))))
RSpredict(seed)
[ FASTA input ]
[ sec struct ]
(((.....................(.....((..................))...........).....)))
Sfold
[ FASTA input ]
[ sec struct ]
((((((........................((((....))))........................))))))
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
((((((........((.....((.......((((....))))........)).....)).......))))))
UNAFold
[ FASTA input ]
[ sec struct ]
((((((.......(((.........)))..((((....))))........................))))))
Vsfold4
[ FASTA input ]
[ sec struct ]
.....................(((......((((....))))..............(((.......))))))
Vsfold5
[ FASTA input ]
[ sec struct ]
.....................(((......((((....))))..............(((.......))))))
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