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RNA Secondary Structure Atlas - RNASTRAND - Corona_pk3
RNA: RFA_00767
| GCACUCUCUAUCAGAUUGGAUGUCUUGCUGCUAUAAUAGAUAGAGAAGGUUAUAGCAGACUA | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | (.....((((......)))).......((((((((((...........))))))))))...) |
| Alterna | [ FASTA input ] | [ sec struct ] | ....(((..........))).(((....(((((((((...........)))))))))))).. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | (((.(((..........))))))....((((((((((...........)))))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....((((((((..........................))))))))................ |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((.(((.....))).....)))....((((((((((...........)))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............((.......))...((((((((((...........)))))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....((((((((((((.....))))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....((((((((((((.....))))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | ....((((((((..((((...((......))..)))).)))))))).((((......)))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((.[[[[[[[[........)))....((((((((((.]]]]]]]]..)))))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((((((...))))))).))))))))))))))))..((((..)))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).)).........((((((((((...(...)...)))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..........................(.(((((((((...........)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))..........((((((...........))))))........ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........((((((((((...........)))))))))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........((((((((((...........)))))))))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......)).............((((((((((...........)))))))))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((((((((((.....))))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((((((.(((.....)))...[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...........................(((((((((.............))))))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((.................)))....((((((((((...........)))))))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))......((((((((((...........)))))))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ....((((((((..(..).((........))((...)))))))))).(((........))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).))...(.....(((...(.(((............))).)))).).. |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ......((((......)))).......((((((((((...........)))))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...((((..(((......))).(((............))).))))...(((......))).. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ...((((..(((......))).(((.....[[[[...))).))))..((((]]]]..)))). |
RNA: RFA_00768
| ACACUCUCUAUCAGAAUGGAUGUCUUGCUGUCAUAACAGAUAGAGAAGGUUGUGGCAGACCC | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...((((((((......(((........)))......)))))))).((((......))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | (((.(((((((((((.......)))...(((....)))))))))))....)))......... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ....((((((((...((((...........))))....)))))))).((((......)))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ....((((((((.(.((((...........))))..).)))))))).((((......)))). |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....((((((((..........................))))))))................ |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.(((.....))).)).........((((((((((...........)))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ....((((((((.(.((((...........))))..).)))))))).((((......)))). |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....(((((((((((.......)))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | ....((((((((...((((..((...))..))))....)))))))).((((......)))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| IPknot | [ FASTA input ] | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((((((...)))))))).))))))))))))))).(.(((..)))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).)).........((((((((((...(...)...)))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ....((((((((......((((.....).)))......)))))))).((((......)))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((((((...............[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ......(((((....))))).......((((((((((...........)))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))...........(((((...........)))))......... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........((((((((((...........)))))))))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........((((((((((...........)))))))))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......)).............((((((((((...........)))))))))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ....(((((((((((.......)))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((((((.....((....))..[[[[[[[[[[.))))))))..]]]]]]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....((((((((...((.(((((...)).)))))....)))))))).((((......)))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......(((((....))))).......((((((((((...........)))))))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((.................)))....((((((((((...........)))))))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))......((((((((((...........)))))))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ....((((((((......(((........)))......)))))))).((((......)))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ....((((((((......(((........)))......)))))))).((((......)))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ....((((((((......(((........)))......)))))))).((((......)))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ....((((((((..(((........)))((......)))))))))).(((........))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).))...(.....(((...(.(((............))).)))).).. |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | ....((((((((......(((........)))......)))))))).((((......)))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........)))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .............................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ....((((((((......(((........)))......)))))))).((((......)))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...((((.((((......)))).....((((....))))..))))..((((......)))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ...((((.((((......)))).....((((....))))..))))..((((......)))). |
RNA: RFA_00769
| UUGGUCUUGCACACAACGGUAAGCCAGUGGUAAUGUCAGUGCAAGAAGGAUAUUACCAUAGCA | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((..............[[[.[[[[[[[.))))))))..]]]]]]].]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((.(((((........))))))).(((((((((((...........))))))))))).).) |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((((((((((.....((((.(((...)))..)))).))))))).........))))..... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ...........................((.(((((((...........))))))).))..... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .((((.((((........))))))))(((((((((((...........))))))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((((((((((...........))))))))))).... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((.(((((((...........))))))).))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..((....(..........)...)).(((((((((((...........))))))))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((((.(((..........)))))))(((((((((((...........))))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....((((((((..............[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((.(((((((...........))))))).))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....((((((((..............[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | ..((.(((((........))))))).(((((((((((...........))))))))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((((((.....((....)).(((((((((((.))))))))..))))))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .(((((((((((((....)))))))))(((((((((((.(((..)))))))))))))).)))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).))........(((((((((((..((....)).))))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..(......)...)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((([[[[[[[[...........))))((((((((((.]]]]]]]]..))))))))))..... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ..(((.((((........))))))).(((((((((((...........))))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))......((..((((((...........))))))..))..... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........(((.(((((((...........))))))).))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........(((.(((((((...........))))))).))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......))............(((.(((((((...........))))))).))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((((((.....((....)).[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .(((.(((((........)))))))).((((((((((...........))))))))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).....(((.(((((((...........))))))).))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((..(.....)..))))))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((..(.....)..))))))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ..(((((((((((((.(..(((((..)))))).)))..))))))))))..((......))... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(.(.....).).)))(......(((.(((((((...........))))))).)))...) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((..(.....)..))))))))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ..((.(((((........))))))).(((((((((((...........))))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((.(((((........))))))))(((((((((((...........))))))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((.(((((........)))))))).((((((((((...........))))))))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((.(((((........)))))))).((((((((((...........))))))))))..... |
RNA: RFA_00770
| CUACUCUUGUACAGAAUGGUAAGCCAAGUGUCAAUAGGAGGUACAAGCAACCUAUUGCAUAUUA | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((...............[[[.[[[[[[[..))))))))..]]]]]]]]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...............(((....))).(((.(((((((..((....))..))))))))))...) |
| Alterna | [ FASTA input ] | [ sec struct ] | .((((...........(((....))))))).(((((((..((....))..)))))))....... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ............................((.(((((((............)))))))))..... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ...((((((((((...(((....)))..)))..)))))))......((((....))))...... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ...............................(((((((............)))))))....... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...........................(((.(((((((............)))))))))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .................((....))...((.(((((((..((....))..)))))))))..... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ...............................(((((((..(......)..)))))))....... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.(((.....)))....))......(((.(((((((............)))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ................(((....))).(((.(((((((..((....))..)))))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....(((((((....(((....))).....[[[[[[[..)))))))...]]]]]]]....... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...........................(((.(((((((............)))))))))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| DotKnot | [ FASTA input ] | [ sec struct ] | ......((((((....(((....))).[[[.[[[[[[[..))))))....]]]]]]]]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | .(((....))).....(((....))).(((.(((((((..((....))..)))))))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....(((((((....(((....))).(((.(((((((..)))))))...)))))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | .................((....))...((.(((((((..((....))..)))))))))..... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.((((.(((((..))))))))))))))))))(((((((((((..))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).)).........(((.(((((((..((....))..)))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ...........................(((.(((((((..((....))..)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..((....))......(((....))).(((.(((((((..((....))..)))))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | .....(((((((....((((..)))).....[[[[[[[..)))))))...]]]]]]]....... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ...........................(((.(((((((..((....))..)))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).......((..((((((............)))))).))..... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .(((([[[[[[(.{{.((((..)))))))).(((((((..)}}]]]]...)))))))....]]. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........(((.(((((((............)))))))))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..)).........(((.(((((((............)))))))))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......)).............(((.(((((((............)))))))))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Pknots | [ FASTA input ] | [ sec struct ] | .....(((((((....(((....))).[[[.[[[[[[[..)))))))...]]]]]]]]]].... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....(((((((....(((....))).....[[[[[[[..)))))))...]]]]]]]....... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((([[[.))).]]].(((....))).(((.(((((((............)))))))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ..........................((((((((((((............))))))).))))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..........................((((((((((((............))))))).))))). |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((.............)))............(((((((............)))))))....... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......)))......(((.(((((((............)))))))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | ................(((....))).(((.(((((((..((....))..)))))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((....))).....(((....))).(((.(((((((..((....))..)))))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((....))).....(((....))).(((.(((((((..((....))..)))))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ....((.((..)))).((((..))))..((.(((((((((((....)))))))))))))..... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(((.....))).)))(((.....(((.(((((((............)))))))))).))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Sfold | [ FASTA input ] | [ sec struct ] | ................(((....))).(((.(((((((..((....))..)))))))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ................(((....))).(((.(((((((..((....))..)))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((....))).....(((....))).(((.(((((((..((....))..)))))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...(((((((...((..((....)).....)).)))))))......((((....))))...... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((..............)))......(((.(((((((............)))))))))).... |
RNA: RFA_00773
| CUAGUCUUAUACACAAUGGUAAGCCAGUGGUAGUAAAGGUAUAAGAAAUUUGCUACUAUGUUA | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((..............[[[.[[[[[[[.))))))))..]]]]]]].]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...............(((....)))(((((((((((...........)))))))))))...) |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((((((((((.((.(((....))).)).........)))))))......))))........ |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ............................(.(((................)))).......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((((((((((...........))))))))))).... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((.(((((((...........))))))).))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .................((....)).(((((((((((...........))))))))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(.(.(((((........)))))).)(((((((((((...........))))))))))).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ................(((....)))(((((((((((...........))))))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....((((((((....(((....)))[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ..........................(((.(((((((...........))))))).))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....((((((((.........[[[..[[[[[[[[[[[.))))))))..]]]]]]]]]]]]]]. |
| Fold | [ FASTA input ] | [ sec struct ] | .................((....)).(((((((((((...........))))))))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((((((....(((....)))(((((((((((.))))))))..))))))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | .....((((.......[[[))))]]](((((((((((...........))))))))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((.(((((((.((...)))))))))))((((((((((((((...))))))))))))))..... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).))........(((((((((((.((....))..))))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..(......)...)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((((((....((((..))))[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).........((.(((.............))).))........ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .((.(((((((([[..((((..))))[[[[[[[[[[[.))))))))..]]]]]]]]]]]]])) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........(((.(((((((...........))))))).))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........(((.(((((((...........))))))).))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......))............(((.(((((((...........))))))).))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((((((....(((....)))[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((((((....(((....)))[[[[[[[[[[[.))))))))..]]]]]]]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ...(.(((((........))))))(.(((((((((((...........))))))))))))... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...........................((((((((((...........))))))))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((...........))))))))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((.............))).......((((((((((.............)))))))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).....(((.(((((((...........))))))).))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ...(.(((((........))))).).(((((((((((..(.....)..))))))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ................(((....)))(((((((((((...........))))))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ................(((....)))(((((((((((..(.....)..))))))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((......))(((..((((..)))))))((((((((...........))))))))((...)) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(.(.....).).)))(((....(((.(((((((...........)))))))).)).))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .....(((((........)))))...(((((((((((..(.....)..))))))))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ..................(....)..(((((((((((...........))))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ................(((....)))(((((((((((...........))))))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .((((.((((((.((..((....))..)))).))))..(((.((....))))).))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .((((.((((((.((..((....))..)))).))))..(((.((....))))).))))..... |
RNA: RFA_00779
| CUACUCUUGUACAGAAUGGUAAGCACGUGUGAUGGGAGGUACAAGCAACCCCAUUACAUAUUA | |||
| Reference structure (ext) | [ sec struct ] | ....((((((((..............[[[[[[[[[[..))))))))...]]]]]]]]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Alterna | [ FASTA input ] | [ sec struct ] | .((((............)))).....((((((((((.............)))))))))).... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ...........................(((((((((.............)))))))))..... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .((((............)))).....((((((((((..((....))...)))))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((.............)))))))))).... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((.............)))))))))).... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..((.......)))))))))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ..((.((.....))....))......((((((((((..((.......)))))))))))).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.(((.....)))....)).....((((((((((.............)))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..((.......)))))))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....(((((((..............[[[[[[[[[[..)))))))....]]]]]]]]]].... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((.............)))))))))).... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((.(((.....))).))).......((((((((((.............)))))))))).... |
| Fold | [ FASTA input ] | [ sec struct ] | .((((.((......)).)))).....((((((((((..((....))...)))))))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .(((([[[[[[[.....)))).....((((((((((..]]]]]]]....)))))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | ..........................((((((((((.............)))))))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((..))))))))).).((((((((((((.(((((..))))))))))))))))).. |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((.....))).))........((((((((((..((....))...)))))))))).... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .....(.......)............((((((((((..((....))...)))))))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..(((............)))......((((((((((..((....))...)))))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | .....(((((((..............[[[[[[[[[[..)))))))....]]]]]]]]]].... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .......(((((......))..))).((((((((((.............)))))))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).........((((((.............))))))........ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........((((((((((.............)))))))))).... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .((((.......))..))........((((((((((.............)))))))))).... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...((.......))............((((((((((.............)))))))))).... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | .....(((((((...(((.......)))[[[[[[[[.[)))))))...]]]]]]]]]...... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....(((((((....((.....)).[[[[[[[[[[..)))))))....]]]]]]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((((............)))).....((((((((((.............)))))))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...........................(((((((((.............)))))))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..........................((((((((((.............)))))))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((.............))).......((((((((((.............)))))))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........(((......))).....((((((((((.............)))))))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((.(((.....))).))).......((((((((((..((....))...)))))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((.(((.....))).))).......((((((((((..((....))...)))))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((.(((.....))).))).......((((((((((..((....))...)))))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((..(.((..)))..)))((((((..))).((((((...)(..)....)))))......))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(((.....))).)))(((....(((.((((((.............)))))).))).))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..((....))...)))))))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ..........................((((((((((..(......)...)))))))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ............................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((.(((.....))).))).......((((((((((..((....))...)))))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..(((............)))......((((((((((.............)))))))))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((.[[[[[[[......)))...........((((..]]]]]]]....)))).......... |