CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - RNASTRAND -
Entero_5_CRE
RNA:
PDB_00741
GGGCUAGCACUCUGGUAUUACGGUACCUUUGUGCGCCC
Reference structure (ext)
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Afold
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Alterna
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CMfinder(seed)
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CMfinder(20)
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CRWrnafold
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Carnac(seed)
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Carnac(20)
[ FASTA input ]
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.....((....))(((((....)))))...........
CentroidAlifold(seed)
[ FASTA input ]
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CentroidAlifold(20)
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CentroidFold
[ FASTA input ]
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CentroidHomfold‑LAST
[ FASTA input ]
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ContextFold
[ FASTA input ]
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Contrafold
[ FASTA input ]
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Cylofold
[ FASTA input ]
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DAFS(seed)
[ FASTA input ]
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DAFS(20)
[ FASTA input ]
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DotKnot
[ FASTA input ]
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Fold
[ FASTA input ]
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HotKnots
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IPknot
[ FASTA input ]
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MCFold (ext)
[ FASTA input ]
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MXScarna(seed)
[ FASTA input ]
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MXScarna(20)
[ FASTA input ]
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((.(..(((((..(((((....)))))..)))))).))
Mastr(seed)
[ FASTA input ]
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Mastr(20)
[ FASTA input ]
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..((..(((((..(((((....)))))..)))))))..
MaxExpect
[ FASTA input ]
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McQFold
[ FASTA input ]
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Multilign(seed)
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Multilign(20)
[ FASTA input ]
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Murlet(seed)
[ FASTA input ]
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Murlet(20)
[ FASTA input ]
[ sec struct ]
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NanoFolder
[ FASTA input ]
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PETfold_2.0(seed)
[ FASTA input ]
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.(((..(((((..(((((....)))))..)))))))).
PETfold_2.0(20)
[ FASTA input ]
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.(((..((((...(((((....)))))...))))))).
PETfold_pre2.0(seed)
[ FASTA input ]
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.((.(.(((((..(((((....)))))..)))))))).
PETfold_pre2.0(20)
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PPfold(seed)
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PPfold(20)
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Pknots
[ FASTA input ]
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PknotsRG
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ProbKnot
[ FASTA input ]
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RDfolder
[ FASTA input ]
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RNASLOpt
[ FASTA input ]
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RNASampler(seed)
[ FASTA input ]
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RNASampler(20)
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RNAalifold(seed)
[ FASTA input ]
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RNAalifold(20)
[ FASTA input ]
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RNAfold
[ FASTA input ]
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RNAshapes
[ FASTA input ]
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RNAsubopt
[ FASTA input ]
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RNAwolf (ext)
[ FASTA input ]
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RSpredict(seed)
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RSpredict(20)
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Sfold
[ FASTA input ]
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TurboFold(seed)
[ FASTA input ]
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......................................
TurboFold(20)
[ FASTA input ]
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UNAFold
[ FASTA input ]
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Vsfold4
[ FASTA input ]
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Vsfold5
[ FASTA input ]
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