CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - RNASTRAND -
HIV_FS2
RNA:
PDB_01152
GGAUGGGGAAAGAAGCCCCGCAAUUUCCCCAUCC
Reference structure (ext)
[ sec struct ]
((((((((((((..((...)).))))))))))))
Afold
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
Alterna
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
CMfinder(seed)
[ FASTA input ]
[ sec struct ]
.((((((((((...((...))..)))))))))).
CMfinder(20)
[ FASTA input ]
[ sec struct ]
.((((((((((...((...))..)))))))))).
CRWrnafold
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Carnac(seed)
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Carnac(20)
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
..((((((((....(.....)...))))))))..
CentroidAlifold(20)
[ FASTA input ]
[ sec struct ]
..((((((((....(.....)...))))))))..
CentroidFold
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
CentroidHomfold‑LAST
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
ContextFold
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Contrafold
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
Cylofold
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
DAFS(seed)
[ FASTA input ]
[ sec struct ]
((((((((((.(..((...))..)))))))))))
DAFS(20)
[ FASTA input ]
[ sec struct ]
((((((((((.(..((...))..)))))))))))
DotKnot
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Fold
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
HotKnots
[ FASTA input ]
[ sec struct ]
(((((((((((...(.....)..)))))))))))
IPknot
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
MCFold (ext)
[ FASTA input ]
[ sec struct ]
((((((((((((.(((...)))))))))))))))
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
.(((((((((.(..((...))..)))))))))).
MXScarna(20)
[ FASTA input ]
[ sec struct ]
.(((((((((.(..((...))..)))))))))).
Mastr(seed)
[ FASTA input ]
[ sec struct ]
(((((((((.((..((...))..)))))))))))
Mastr(20)
[ FASTA input ]
[ sec struct ]
(((((((((.((..((...))..)))))))))))
MaxExpect
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
McQFold
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Multilign(seed)
[ FASTA input ]
[ sec struct ]
..................................
Multilign(20)
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Murlet(seed)
[ FASTA input ]
[ sec struct ]
...(((((((.(..((...))..))))))))...
Murlet(20)
[ FASTA input ]
[ sec struct ]
...(((((((.(..((...))..))))))))...
NanoFolder
[ FASTA input ]
[ sec struct ]
..................................
PETfold_2.0(seed)
[ FASTA input ]
[ sec struct ]
...(((((((.(..((...))..))))))))...
PETfold_2.0(20)
[ FASTA input ]
[ sec struct ]
...(((((((.(..((...))..))))))))...
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
..((((((((.(..((...))..)))))))))..
PETfold_pre2.0(20)
[ FASTA input ]
[ sec struct ]
..((((((((.(..((...))..)))))))))..
PPfold(seed)
[ FASTA input ]
[ sec struct ]
..................................
PPfold(20)
[ FASTA input ]
[ sec struct ]
.(.(((((((....((...))...))))))).).
Pknots
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
PknotsRG
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
ProbKnot
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
RDfolder
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
RNASLOpt
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
RNASampler(seed)
[ FASTA input ]
[ sec struct ]
((((((((((..............))))))))))
RNASampler(20)
[ FASTA input ]
[ sec struct ]
((((((((((..............))))))))))
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
.(.(((((((.(..((...))..)))))))).).
RNAalifold(20)
[ FASTA input ]
[ sec struct ]
...(((((((.(..((...))..))))))))...
RNAfold
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
RNAshapes
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
RNAsubopt
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
(((((((((((((........)))))))))))))
RSpredict(seed)
[ FASTA input ]
[ sec struct ]
.(((((((((....((...))...))))))))).
RSpredict(20)
[ FASTA input ]
[ sec struct ]
.(((((((((....((...))...))))))))).
Sfold
[ FASTA input ]
[ sec struct ]
(((((((((((...((...))..)))))))))))
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
..................................
TurboFold(20)
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
UNAFold
[ FASTA input ]
[ sec struct ]
(((((((((((...(.....)..)))))))))))
Vsfold4
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
Vsfold5
[ FASTA input ]
[ sec struct ]
(((((((((((............)))))))))))
^top
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