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RNA Secondary Structure Atlas - RNASTRAND - RydC
RNA: RFA_00808
| CUUCCGAUGUAGGCCCGUAUUCUUCGCCUGUACCACGGGUCGGUUUUAGUACAGGCGUUUUCUU | |||
| Reference structure (ext) | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...........(((.(((((..(((((((.....)))).)))....))))).))).......) |
| Alterna | [ FASTA input ] | [ sec struct ] | .....((((....((.(((((((..((((((...)))))).))....))))).))))))..... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ......((........))......(((((((((...............)))))))))....... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....((.....(((.(((((..((((((((...))))).)))....))))).)))....)).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ........................((((((((((((.........))))))))))))....... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((........(((((((................)))))))............))......... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ........................(((((((((....((....))...)))))))))....... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ................................................................ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| DotKnot | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
| Fold | [ FASTA input ] | [ sec struct ] | .....((.....(((.(((((..((((((((...))))).)))....))))).)))....)).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
| IPknot | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ......(((((((((((((...))))(((((((((.((((..)))))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .....((...(.(((.(((((..((((((((...))))).)))....))))).))).)..)).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .....((.....(((.(((((..(((((((.....)))).)))....))))).)))....)).. |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ...((......))...........(((((((((....((.....))..)))))))))....... |
| McQFold | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ...((......))...........(((((((((...(((.....))).)))))))))....... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ...(((((.[[[[[[[[[)))...{{{{{{{{{.]]]]]]]))...]]}}}}}}}}}....... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ........................((((((((((.............))))))))))....... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ........................((((((((((.............))))))))))....... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ........................(((((((((...(((.....))).)))))))))....... |
| RDfolder | [ FASTA input ] | [ sec struct ] | (((.......)))...........(((((((((...............)))))))))....... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ......(((......)))......(((((((((...(((.....))).)))))))))....... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....((...(.(((.(((((..(((((((.....)))).)))....))))).))).)..)).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ............(((.(((((..(((((((.....)))).)))....))))).)))........ |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....((...(.(((.(((((..(((((((.....)))).)))....))))).))).)..)).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .....((.............))..(((((((((...............)))))))))....... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..........(((...(........((((((((...............))))))))..).))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| Sfold | [ FASTA input ] | [ sec struct ] | .....((...(.(((.(((((..((((((((...))))).)))....))))).))).)..)).. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................(((((((((...............)))))))))....... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ................................................................ |
| UNAFold | [ FASTA input ] | [ sec struct ] | ............(((.(((((..(((((((.....)))).)))....))))).)))........ |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .....((((........))))...(((((((((...............)))))))))....... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ...........(((((((......[[[[[[[[[.))))))).......]]]]]]]]]....... |
RNA: RFA_00809
| CUUCCGAUGUAGACCCGUCCUCCUUCGCCUGCGUCACGGGUCCUGGUUAGACGCAGGCGUUUUCUG | |||
| Reference structure (ext) | [ sec struct ] | ...........(((((((.......[[[[[[[[[.))))))).......]]].]]]]]]....... | |
| Afold | [ FASTA input ] | [ sec struct ] | (....((((......))))......((((((((((((.(....).))..))))))))))......) |
| Alterna | [ FASTA input ] | [ sec struct ] | .........((((............((((((((((.(((...)))....))))))))))...)))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .....(((........)))......((((((((((..............))))))))))....... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((..............))))))))))....... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .........................((((((((((((..........))))))))))))....... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .........................((((((((((((........))..))))))))))....... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .........................((((((((((..............))))))))))....... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.......))..............(((((((((..............)))))))))........ |
| Contrafold | [ FASTA input ] | [ sec struct ] | .........................((((((((((((((...)).))..))))))))))....... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .........................(((((((((................)))))))))....... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| Fold | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((........))..))))))))))....... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| IPknot | [ FASTA input ] | [ sec struct ] | .........................((((((((((..............))))))))))....... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .....(((((((((..)))))))))(((((((((((((((..)))))..))))))))))....... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .....((((......)))).......(((((((((((((...)).))..)))))))))........ |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((..............))))))))))....... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((........))..))))))))))....... |
| McQFold | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((........))..))))))))))....... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .........................(((((((((................)))))))))....... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .........................((((((((((..............))))))))))....... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .........................((((((((((..............))))))))))....... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .........................(((((((((................)))))))))....... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ...........(((((((.......[[[[[[[[[[))))))).......]]]]]]]]]]....... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((((...)).))..))))))))))....... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((..............))))))))))....... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((..............))))))))))....... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((...(((....))).))))))))))....... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .........................(((((((((................)))))))))....... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((.(((...)))....))))))))))....... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((.(((...)))....))))))))))....... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((.(((...)))....))))))))))....... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ...(.(...................((((((((((..............))))))))))....).) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..........(((...(.........((((((((................))))))))..).))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((........))..))))))))))....... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((.(........)...))))))))))....... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((((........))..))))))))))....... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .....((((......))))......((((((((((..............))))))))))....... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .....((((..[[[[)))).........(((((((...]]]].......))))))).......... |