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RNA Secondary Structure Atlas - RNASTRAND - TPP
RNA: PDB_01114
| GCGACUCGGGGUGCCCUGCGUGAAGGCUGAGAAAACCCGUAACCUGAUCUGGAUAAUGCCAGCGAGGGAAGUCGCA | |||
| Reference structure (ext) | [ sec struct ] | ((((((((((((((((.......))))......)))))).(((((((.((((......))))))))))))))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((..(((((((.........))).......))))....(((...((((......))))...))).)))))). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........(((.((((.....)..)))........)))....(((...((((......))))..)))......... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((..(((((((.........))).......))))....(((...((((......))))..)))..)))))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................((((......)))).............. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((......(((((.....)))))...............(((...((((......))))..)))..))))).. |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))........))))...(((...((((......))))..)))..))))).. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((((((.((((.........))).......)))))...(((...((((......))))...))).)))))). |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ..........................................(((...((((......))))...)))........ |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((.((((.((((.........)))......).))))...(((...((((......))))..)))...))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((((((.((((.........))).......)))))...(((...((((......))))...))).)))))). |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((((((....(((......))).........[[[....))))).((((......))))...]]]..))))). |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ........(.........)(....).................(((...((((......))))..)))......... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .((((((((...(((.........))).........)))...(((...((((......))))...))).))))).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((((((....(((......))).........))))...(((...((((......))))...))).)))))). |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((..((((...((..((....))..))...))))....(((...((((......))))...))).)))))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((((((...(.(.((......)).).)....))))...(((...((((......))))...))).)))))). |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((((.((.....((......)).......)))))...(((...((((......))))...))).)))))). |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((((..)))))).)))))))))..(((((((((((((..))))))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.((((((((((.....)))))).......))))...((((..(((((....)))))..)))).))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(((((.(.(((....))))........)))))...((((..(((((....)))))..)))).))))).. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .(((((.((...((((.......))))..........))...(((...((((......))))..)))..))))).. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((..(((((.....(......)).......))))....(((...((((......))))...))).)))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((((((..))))).................(((..........((((......))))...))).)))))). |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((..((((...((..((....))..))...))))....(((...((((......))))...))).)))))). |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((((((.........................))))...(((...((((......))))..)))..))))).. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))(...)...))))...((((..((((......))))).)))..))))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))........))))...((((..((((......))))).)))..))))).. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))(...)...))))(..((((..((((.(...)))))).)))).))))).. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))........))))...((((..((((......))))).)))..))))).. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))........))))...((((..((((......))))).)))..))))).. |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((((..(((.........)))........))))...(((...((((......))))...))).)))))). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((..((((.....((......)).......))))....(((...((((......))))...))).)))))). |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((.((((......................)))))...(((...((((......))))...))).)))))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((.......((((........((((........(((...............))).)))).)))).)))))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((..((((......................))))..........((((......)))).......)))))). |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((..((((......................))))....(((...((((......))))..)))..)))))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((((((.........................))))...(((...((((......))))..)))..))))).. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((((((..((((.......))))........))))...(((...((((......))))..)))..))))).. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(.(.((......)).).)...))))....(((...((((......))))...))).)))))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((..((((.....((......)).......))))....(((...((((......))))...))).)))))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((..((((.(.(.((......)).).)...))))....(((...((((......))))...))).)))))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((...(((.(...)))).(...)..)))))...((((..(((((...).))))).)))..)))))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(((.........................)))....(((...((((......))))..)))..))))).. |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((((((.........................))))...(((...((((......))))..)))..))))).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((((((.......((......))........))))...(((...((((......))))...))).)))))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................ |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((((((..(((.(......))))........))))...(((...((((......))))...))).)))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((..((((.....((......)).......))))....(((...((((......))))...))).)))))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((..((((......................))))..........((((......)))).......)))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((...((((.[[[[.................))))..........((((......))))..]]]]..))))). |