CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - RNASTRAND -
Tymo_tRNA-like
RNA:
PDB_00005
GGGAGCUCAACUCUCCCCCCCUUUUCCGAGGGUCAUCGGAACCA
Reference structure (ext)
[ sec struct ]
(((((.......)))))(((...[[[[[[)))...]]]]]]...
Afold
[ FASTA input ]
[ sec struct ]
............................................
Alterna
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
CMfinder(seed)
[ FASTA input ]
[ sec struct ]
.((.(.........))).......(((((......)))))....
CMfinder(20)
[ FASTA input ]
[ sec struct ]
............................................
CRWrnafold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
Carnac(seed)
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
Carnac(20)
[ FASTA input ]
[ sec struct ]
............................................
CentroidAlifold(seed)
[ FASTA input ]
[ sec struct ]
.((((.......))))........(((((......)))))....
CentroidAlifold(20)
[ FASTA input ]
[ sec struct ]
............................................
CentroidFold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
CentroidHomfold‑LAST
[ FASTA input ]
[ sec struct ]
....(.......)..........((((((......))))))...
ContextFold
[ FASTA input ]
[ sec struct ]
(((((.....))))).........(((((......)))))....
Contrafold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
Cylofold
[ FASTA input ]
[ sec struct ]
(((((.......))))).(((..[[[[[[)))...]]]]]]...
DAFS(seed)
[ FASTA input ]
[ sec struct ]
....(.......).....(((........)))............
DAFS(20)
[ FASTA input ]
[ sec struct ]
............................................
DotKnot
[ FASTA input ]
[ sec struct ]
(((((.......))))).(((..[[[[[[)))...]]]]]]...
Fold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
HotKnots
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
IPknot
[ FASTA input ]
[ sec struct ]
(((((.......))))).((((.[[[[[))))....]]]]]...
MCFold (ext)
[ FASTA input ]
[ sec struct ]
(((((((...)))))))....((((((((((..))))))))).)
MXScarna(seed)
[ FASTA input ]
[ sec struct ]
........................(((((......)))))....
MXScarna(20)
[ FASTA input ]
[ sec struct ]
............................................
Mastr(seed)
[ FASTA input ]
[ sec struct ]
(....)(..).............((((((......))))))...
Mastr(20)
[ FASTA input ]
[ sec struct ]
............................................
MaxExpect
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
McQFold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
Multilign(seed)
[ FASTA input ]
[ sec struct ]
............................................
Multilign(20)
[ FASTA input ]
[ sec struct ]
............................................
Murlet(seed)
[ FASTA input ]
[ sec struct ]
.....((.)).............((((..........))))...
Murlet(20)
[ FASTA input ]
[ sec struct ]
............................................
NanoFolder
[ FASTA input ]
[ sec struct ]
............................................
PETfold_2.0(seed)
[ FASTA input ]
[ sec struct ]
..(((.......)))........((((((......))))))...
PETfold_2.0(20)
[ FASTA input ]
[ sec struct ]
............................................
PETfold_pre2.0(seed)
[ FASTA input ]
[ sec struct ]
..(((.......)))........((((((......))))))...
PETfold_pre2.0(20)
[ FASTA input ]
[ sec struct ]
............................................
PPfold(seed)
[ FASTA input ]
[ sec struct ]
............................................
PPfold(20)
[ FASTA input ]
[ sec struct ]
............................................
Pknots
[ FASTA input ]
[ sec struct ]
(((((.......)))))(((...[[[[[[)))...]]]]]]...
PknotsRG
[ FASTA input ]
[ sec struct ]
(((((.......)))))(((...[[[[[[)))...]]]]]]...
ProbKnot
[ FASTA input ]
[ sec struct ]
(((((.......))))).(((..[[[[[[)))...]]]]]]...
RDfolder
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNASLOpt
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNASampler(seed)
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNASampler(20)
[ FASTA input ]
[ sec struct ]
............................................
RNAalifold(seed)
[ FASTA input ]
[ sec struct ]
........................(((((......)))))....
RNAalifold(20)
[ FASTA input ]
[ sec struct ]
............................................
RNAfold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNAshapes
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNAsubopt
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
RNAwolf (ext)
[ FASTA input ]
[ sec struct ]
((((((...)..))))).((((......))))....(..)....
RSpredict(seed)
[ FASTA input ]
[ sec struct ]
..(((.......))..)......((((((......))))))...
RSpredict(20)
[ FASTA input ]
[ sec struct ]
............................................
Sfold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
TurboFold(seed)
[ FASTA input ]
[ sec struct ]
............................................
TurboFold(20)
[ FASTA input ]
[ sec struct ]
............................................
UNAFold
[ FASTA input ]
[ sec struct ]
(((((.......)))))......((((((......))))))...
Vsfold4
[ FASTA input ]
[ sec struct ]
.((((.......)))).......((((((......))))))...
Vsfold5
[ FASTA input ]
[ sec struct ]
(((((....[[[)))))......((((((.]]]..))))))...
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