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RNA Secondary Structure Atlas - RNASTRAND - Vimentin3
RNA: RFA_00642
| UUCAAAUUUGAAAUAUUUUGCACACUUAUACUUUCAAGUGCCUUUCUACACAUUUUUCCAUGAGCACAGGAUGGUUA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((..................)))...((((.(((.((..........))))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Alterna | [ FASTA input ] | [ sec struct ] | .....((((((((..................))))))))(((.((((...(((......))).....)))).))).. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .....................................((((..((.(............).)))))).......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).))))))))(((..(((...(((......))).....)))..))).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ......................................(((......................)))........... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(((........................................................))).............. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .....((.......)).............(((.((..((((.((..(............).))))))..)).))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((....)))...........(((((........)))))................(((.........)))...... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .......((((((......[[[[........))))))]]]]................((((.........))))... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .......................................((......................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).)))))))).................(((...[[[...)))..]]]. |
| Fold | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..((((.((.................))))))..)).))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....((((((((.....{{{..........)))))))).(((..............[[[[..}}}.)))]]]]... |
| IPknot | [ FASTA input ] | [ sec struct ] | .......((((((.........[[[......))))))]]]((..............................))... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((..))))))))))((((((((..))))))))((((((((((((((....)))))))..)))))))... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((((............................((((..(((((..........))))))))))).))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.........................................................)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((....)))...................((.((..(((........................)))..)).))... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((..))))).......((((..............))))................((((.........))))... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....((((((...................(((....)))((......................))..)))))).... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((....................(((.....(((......)))...........)))...)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((....................(((.....(((......)))...........)))...)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((....))))..........(((((........)))))((((((...............)))...)))....... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((....))))......(((.(((((........))))).................[[[[..)))....]]]]... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.....((((.((.................)))))).....))).. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ......................(((((........))))).................((((.........))))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((....)))).......((((..............))))................((((.........))))... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....((((((((..................)))).................................))))..... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((....................((....)).((((.................)).))..)))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..(((((...................).))))..)).))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..((((...((...............))))))..)).))).. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).))))))))(((.((((.(.(((......))).)...)))).))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((..)))))(...((((..(((((........))))).....((.(.((........))))).))))....).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .....((((.....................(((.....((........))...........)))....))))..... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((....)))).................((..((..((((...((...............))))))..))..)).. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((....)))........((((..............))))................((((.........))))... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((....)))).......((((..............))))................((((.........))))... |
RNA: RFA_00643
| AAAAAAAGUGAAAAAAUAACAGCUUUAAAGUGCCUUUCUGCAGUUAUCUGAGAGCGCCAGAUAGAGU | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((..........)))...((((.(((.((........))))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Alterna | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((....(((......)))........)))))............ |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............................................((((((.......)))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .............................((((..((.((........)).)))))).......... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .....((((............))))....((((.((((...........)))))))).......... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ......................((....)).............(((((((.......)))))))... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....(((((............)))))...((((..........[[[[[[[...))))]]]]]]]... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...............................((....................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | .....................(((((....(((......))).[[[[[[[)))))..]]]]]]]... |
| Fold | [ FASTA input ] | [ sec struct ] | .......((.........)).((((((..((((...(((.(((....))))))))))....)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((({{{{........)))))...((((.}}}}.....[[[[[[[...))))]]]]]]]... |
| IPknot | [ FASTA input ] | [ sec struct ] | .....((((............))))....(((............[[[[[[....)))]]]]]].... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ......((((((...))))))((((((((.(((((((((.((((..))))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((...................((((..(.(((........).))))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((.........................(((......................))))...)).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .......((.........)).((((((..((((...(((.(((....))))))))))....)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ....(((((............)))))....(((......))).(((((((.......)))))))... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((....(((......)))........)))))............ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ................................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((...........((((.....(((......))).........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((...........((((.....(((......))).........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | ....(((((............)))))....(((......))).(((((((.......)))))))... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....................(((((....(((......))).[[[[[[[)))))..]]]]]]]... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....................((((((..((((.(..((.(((....))))))))))....)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ............................................((((((.......)))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ....(((((............))))).................(((((((.......)))))))... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .......(((..(((........))).......(((((...........)))))))).......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((..(.(((......))).)......)))))............ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .(((((((((.(......))).)))))))..((((((((((..(........)..).))))))).)) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .....(..((...........(((((....(((......)))........)))))..))..)..... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ................................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....................((((((..((((...(((.(((....))))))))))....)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ....(((((............)))))...((((.((((...........)))))))).......... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....(((((......[[[[[.)))))...((((.((((....]]]]]..)))))))).......... |
RNA: RFA_00644
| GUUGUGUUUUAAAAUUUGAAGAAAACCAGCUUUCAAGUGCCUUUUGCAGUUAAUUGGAGAGCGCAAGAUAGGGA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((.................)))...((((.(((((........)).))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((((((..((((....((((......))))...(((.....)))...))))..))))))))).......) |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((((((((((...))))))....((((((.......((.....)))))....)))....)))))........ |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ............................(((((....(((.....))).........)))))............ |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((.(((((...........)))))))))..((..((((((((...........)))).))))..))...... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .............................................(.................).......... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ...............((((((........)).))))(((((((.............))).)))).......... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ....((((((.....((((((.........))))))((((.(((((........)).))))))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .................((.............))........(((((.((..........)))))))....... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .(((((((((...((((((((.........))))))))...................)))))))))........ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ......................................((....................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((...((((((...))))))..)))..((((((.....[[[[.............)))))).......]]]]. |
| Fold | [ FASTA input ] | [ sec struct ] | ((((.(((((...........))))))))).........((((((((.(((........))))))))..))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | .(((((((((...((((((((....[[[[.)))))))).{{{{..........]]]])))))))))...}}}}. |
| IPknot | [ FASTA input ] | [ sec struct ] | ..((.(((........[[.....))))).....]].((((....................)))).......... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((..))))))))))))((.(((((.(.(((((((((((((..))))))))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((..........................((((..((((.........))).))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((............................(......................)..)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..((((((((...............................................))))))))......... |
| McQFold | [ FASTA input ] | [ sec struct ] | .(((((((((...((((((((.........))))))))...................)))))))))........ |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................(((....)))((.....)).................)))))).... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((..................((((.....(((.....)))..........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((..................((((.....(((.....)))..........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | .............((((((((.........)))))))).((((((((.(((........))))))))..))).. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....(((((...[[[[[[[[)))))....]]]]]]]].((((((((.(((........))))))))..))).. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ..((((((((..((((((((...........)))))................)))..))))))))......... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .............(((((((...........))))))).................................... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .(((((((((..((((...........((((..((((.....)))).))))))))..)))))))))........ |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..........((((......))))..............................)))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................((........)).....((.............))..)))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((((((((..((((....((((......))))...(((.....)))...))))..)))))))))........ |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((((((((..((((....((((......))))...(((.....)))...))))..)))))))))........ |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((((((((..((((....((((......))))((.(((.....))).))))))..)))))))))........ |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((((((((((((......)))))))((((..))))..((...............)))))))))(......) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................((((((...(((.....)))........))))))..)))))).... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((((((((..(.........................((.....)).......)..)))))))))........ |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .......................................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((((((((..((((....((((......))))...(((.....)))...))))..)))))))))........ |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..(((...(((.....))).((((......))))..((((((((...........)))).))))...))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..(((...(((.....))).((((......))))..((((((((...........)))).))))...))).... |
RNA: RFA_00645
| AAAGAAAAGAAAAGAAAAACAGCUUUAAAGUGCCUUCUUUGCAUUGCCACAUUAGAGCGGUCUGUUAUUA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((..........)))...((((.((.(.((........))..))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...........(((......(((((((.(((.(...........).))).)))))))..)))......) |
| Alterna | [ FASTA input ] | [ sec struct ] | ..............((.((((((((((((((((.......)))))......))))))....))))).)). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ..............................(((..((.(..............))))))........... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .................(((((((((((.(((...............))).)))))))....)))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .......(......................................................)....... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ...................(.(((((((.(((...............))).))))))).).......... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .....................(((((((.(((...............))).)))))))............ |
| ContextFold | [ FASTA input ] | [ sec struct ] | ........((...(.......(((((((.(((...............))).)))))))....)....)). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ..................((.(((((((.(((.(...........).))).))))))).))......... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ..........((((((.....[[[[[[[[[[[[.))))))]]]]]......]]]]]]]............ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ...............................((.......................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ..........((((((.....[[[[[[[.[[[..)))))).......]]].]]]]]]]............ |
| Fold | [ FASTA input ] | [ sec struct ] | ..................((.(((((((.((((............).))).))))))).))......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ..........((((((.....[[[[[[[[[[[[.))))))]]]]](((...]]]]]]])))......... |
| IPknot | [ FASTA input ] | [ sec struct ] | .....................(((((((.(((...............))).)))))))............ |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .....((((((((((....((((((((((((((((((...)..))))))))))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ..(......((((((..............((((..((.(((........)..)))))))))))))).).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................................................)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .....................(((((((.((((............).))).)))))))............ |
| McQFold | [ FASTA input ] | [ sec struct ] | .....................((((((((((((.......)))))......)))))))............ |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((....(((.......)))..........)))))............ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((...........((((.....(((.......)))...........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((...........((((.....(((.......)))...........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | ..........((((...[[[[[))))..(((((.......)))))((.........))...]]]]].... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ..........((((...[[[[[))))..(((((.......)))))................]]]]].... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....................(((((((.((((............).))).)))))))............ |
| RDfolder | [ FASTA input ] | [ sec struct ] | ............................(((((.......)))))......................... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....................((((((((((((.......)))))......)))))))............ |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....................((((((((((((.......)))))......)))))))............ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .....................(((((..(.(((.......))).)........)))))............ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ............(((......(((((((.(((.(...........).))).)))))))..)))....... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ............(((......((((((((((((.......)))))......)))))))..)))....... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ............(((......(((((((.(((.(...........).))).)))))))..)))....... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((......)))..((.(((((((((((.(((...............))).)))..).)).))))).)). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ....((.(((...........((((((...(((.......))).........))))))..))).)).... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .....................(((((((.(((.(...........).))).)))))))............ |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ............(((......(((((((.(((...............))).)))))))..)))....... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .................(((((........(((.......))).(((.........)))..))))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .....((((((.......[[[[........[[..)))))).]].(((.........)))..]]]]..... |
RNA: RFA_00649
| UUCGUAUCUUAAGGAAACAGCUUUCAAGUGCCUUUACUGCAGUUUUUCAGGAGCGCAAGAUAGAUU | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((........)))...((((.(((..((........))))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | (((.(((((....((((....))))..((((.....(((........)))..)))).))))))).) |
| Alterna | [ FASTA input ] | [ sec struct ] | ....((((((((((.....(((....))).))))....((.(((((...))))))))))))).... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((..((.(............))))))).......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ....((((((...((((....))))..(((((((..............))).)))))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..............((((.((.................)).))))..................... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....(((((..................((((.....(((........)))..)))).))))).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ....((((((..(....).........((((.(((..((........))))))))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .....((((...((((((.((......(........).)).))))))..........))))..... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ..........((((.....[[[[.......))))................]]]]............ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .............................((.....................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ..........(((((((....))))..[[[[)))..(((........)))..]]]].......... |
| Fold | [ FASTA input ] | [ sec struct ] | .((.(((((....((((....))))..((((.((..(((........))))))))).))))))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | .((.((((((..(....).(((((.((.(((.......))).)).....)))))..)))))))).. |
| IPknot | [ FASTA input ] | [ sec struct ] | ....(((((................................................))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((.((((((.(((((((.(((((..))))))))))))((.(((((...)))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((.................((((..((.(((........))))))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................((.......................)).)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .((.(((((....(..........)..((((.((..(((........))))))))).))))))).. |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((((.................((((.....(((........)))..)))))))))).... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ...................(((((....(((.......)))........)))))............ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.........((((.....(((.......))).........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.........((((.....(((.......))).........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((((((((......))))..((((....))))((.((((.....)))))))))))).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .((.((((..((((.....(((....))).))))...(((.((((.....))))))).)))))).. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((.((((((...((((....))))..((((.((..(((.(.....)))))))))))))))))).. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...........................((((.....(((........)))..)))).......... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ....((((((...((((.((((....((((....))))..))))))))........)))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ....((((((...((((....))))...............................)))))).... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.........((........)).......((............))..)))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | .((.((((((..(....).(((((.((.(((.......))).)).....)))))..)))))))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .((.((((..((((.....(((....))).))))...(((.((((.....))))))).)))))).. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .((.((((((..(....).........((((.....(((........)))..)))))))))))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((.((((((((..(((..((((..))))..)))(((((........)))))..)))))))))).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.........(((((....(((.......)))........)))))..)))))).... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | .((.((((((..(....).((((.....(((.......))).........))))..)))))))).. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | .((.((((((...((((....))))..((((.....(((........)))..)))))))))))).. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ......(((....((((....)))).((((....))))...((((.....)))).......))).. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ......(((....((((....)))).((((....))))...((((.....)))).......))).. |
RNA: RFA_00651
| UCCAUAUCUUAAAGAAACAGCUUUCAAGUGCCUUUCUGCAGUUUUUCAGGAGCGCAAGGAAUUAA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((........)))...((((.(((.((........))))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Alterna | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ...........................((((..(((............))))))).......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .................................(((((........))))).............. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....(.((((.(((......)))....((((..(((((........))))))))))))).).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((.....(.........)........((((.(((.((........)))))))))..)))..... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............(((......)))..((((..(((((........))))))))).......... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ............((((((.........[[[..[[[[[[..))))))]]]]]]]]].......... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .............................((....................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .............((((....))))...(((.[[[[[)))((((.....))))...]]]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | (((....(((((((......)))).))).((.((((((........)))))).))..)))..... |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| IPknot | [ FASTA input ] | [ sec struct ] | ...........(((......)))......((..(((((........)))))..)).......... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((.(((((((((....))))).))))((((((((((((..)))))))))))))))))..... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((.................((((..(((((........))))))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((..................((......................)).)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((........(((......)))......((.((((((........)))))).))..)))..... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((........................((((..(((((........)))))))))..)))..... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.........(((....)))((......))................)))))).... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ................................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.........((((.....(((......))).........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.........((((.....(((......))).........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ......((((((((......))))...((((..(((((........))))))))).))))..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((........(((......))).....(((.((((((.(.....))))))).))).)))..... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....................((((..((((..(((((........)))))))))..)))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......((((...((((....))))..((((....................)))).))))..... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ......((((...((((....))))..............................))))...... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ...................(((((..(.(((......))).)......)))))............ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((.(((((.((((.....((((..))))..))))(((........))).)).))).)))..... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ....(.((((.........(((((....(((......)))........)))))..)))).).... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | (((..........(((......)))........(((((........)))))......)))..... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((..........((((....))))..((((..(((((........)))))))))..)))..... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ......(((....((((....))))..(((.(((.(((........)))))))))..)))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ......(((....((((....))))..((((.((.(((........)))))))))..)))..... |
RNA: RFA_00653
| GUAAAAUAGAAAAACAGCUUUAAAGUGCCUUUUUUUGCAUUGCCACAUUAGAGCGGUCUGUUGAUA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((.....)))...((((.(((...((........))..))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | (...((((((......(((((((.(((.(............).))).)))))))..))))))...) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((..((((((......(((((((.(((.........((...))))).)))))))..)))))).)). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ................(((((....(((........)))..........)))))............ |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((................))).)))))))..)))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ......((..................................................))...... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..............(.(((((((.(((................))).))))))).).......... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .....(((((......(((((((.(((.(............).))).)))))))..)))))..... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ....((((........(((((((.(((................))).)))))))....)))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............((.(((((((.(((................))).))))))).))......... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ................((((((((((((........)))))......))))))).(((....))). |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ..........................((........................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((..........[[[[[[[.[[[.....)))))).....]]].]]]]]]].(((....))). |
| Fold | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.((((.............).))).)))))))..)))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((.(............).))).)))))))..)))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((................))).)))))))..)))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ....((((((((((((((((((((((((((((((..)))))))))))))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((..............((((..((..(((........)..)))))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((.........................................................))..... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.((((.............).))).)))))))..)))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ................(((((....(((........)))..........)))))............ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((......((((.....(((........)))...........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((......((((.....(((........)))...........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.((((.............).))).)))))))..)))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((................))).)))))))..)))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ................((((((((((((........)))))......)))))))............ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((......((........)).......(((..............))).)))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((.(............).))).)))))))..)))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((.(............).))).)))))))..)))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((.(((((((((..((((..))))...))))))))).)))).((........))(((..))).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ....((((((......((((((...(((........))).........))))))..)))))).... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Sfold | [ FASTA input ] | [ sec struct ] | ....((((((......(((((((.(((.(............).))).)))))))..)))))).... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ....((((((......((((((((((((........)))))......)))))))..)))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ............(((((........(((........))).(((.........)))..))))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((...((((........))))...(((........))).))).....((((....))))...... |
RNA: RFA_00654
| UUCAUGUCUUAAAGGAAGAAACAGCUUUCAAGUGCCUUUCUCCAGUUUUUCCAUGAGCGCAAGAUUAUUA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((............)))...((((.(((.((.........))))))))))))))).... | |
| Afold | [ FASTA input ] | [ sec struct ] | (....(((((...(((.((((..((........)).))))))).((((......))))..)))))....) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((.......(((.((((..(((....)))...)))))))........))))))............. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ...............................((((..((...............)))))).......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....(((((...(((.((((..(((....)))...))))))).((((......))))..)))))..... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .(((((.......((..((((..(((....)))...)))).))........))))).............. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ......((.......................((((.....(...........)...))))..))...... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .....(((((...(((((......)))))..((((.((..(...........).)))))))))))..... |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((((.......(((.((((..(((....)))...)))))))........))))).............. |
| Cylofold | [ FASTA input ] | [ sec struct ] | .(((((.......(((((......)))))..[[[[................)))))]]]].......... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .................................((.....................))............ |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | .............(((((((...........[[[[..........)))))))....]]]].......... |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((.......(((.((((..((........)).)))))))........))))))............. |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....(((((...(((.((((..((........)).))))))).((((......))))..)))))..... |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((.......((.(((((..((........)).)))))))........))))))............. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .(((((((((((((((((((((.(((((..))))))))))))))))))))))))))(((..)))...... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.((((((.....................((((..(((((.........))))))))))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.......................(.......................)..)))))).... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((.......((.(((((..((........)).)))))))........))))).............. |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((......((((((.................))))))..........))))))............. |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ...............................................(......)............... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.............(((....)))((.....................))..)))))).... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.............((((.....(((......)))..........))))..)))))..... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.............((((.....(((......)))..........))))..)))))..... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .......(((.............(((...(((...))).................)))..)))....... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((((((....))).((((.((((.................))))))))))))))(....)....... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((.......((.(((((..((........)).)))))))......[[)))))).....]]...... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((((([[[[...((.(((((...............)))))))........)))))....]]]]...... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .(((((......((((((.................))))))..........))))).............. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....(((((...(((((......)))))..((((.....................)))))))))..... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.......((((....))))...............................)))))..... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.............(((....)))((((................)).))..)))))).... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....(((((...(((.((((..((........)).))))))).((((......))))..)))))..... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....(((((...(((.((((..((........)).))))))).((((......))))..)))))..... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....(((((...((.(((((..((........)).))))))).((((......))))..)))))..... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((.(((((.(((((..((((..((((..))))...)))).....))))).(..))).))).))...... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .....(((((.............((((.....((........))..........))))..)))))..... |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((((.......((.(((((..((......))...)))))))........))))).............. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .............(((((......)))))..((((.((................)))))).......... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ...................................................................... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....(((((...(((.((((..((........)).))))))).((((......))))..)))))..... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .....((((....(((((......)))))..((((.....................)))).))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .....((((....(((((......)))))..((((.....................)))).))))..... |