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RNA Secondary Structure Atlas - RNASTRAND - s2m
RNA: PDB_00810
| GGAGUUCACCGAGGCCACGCGGAGUACGAUCGAGGGUACAGUGAAUU | |||
| Reference structure (ext) | [ sec struct ] | ..((((((((...(((((((((...)))..)).))))..)))))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((..(((((....(((.((((.....))..))..)))...))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ..(((((((.(...........................).))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ....(((((....(((...((.....))......)))...))))).. |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ....(((((....(((...((.....))......)))...))))).. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ..(((((((....(((...(((.......)))..)))...))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ..(((((((...............................))))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ..(((((((...............................))))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...((((((.(..(((.((((.....))..))..))).).)))))). |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ...((((((.(..(((.((((.....))..))..))).).)))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..(((((((.(..(((.((...........)).)).).).))))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....(((((....(((.((((.....))..))..)))...))))).. |
| ContextFold | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ..(((((((.(..(((.((((.....))..)).)).).).))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ..(((((((..............((((........)))).))))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | (...(((((....(((.((((.....))..))..)))...))).))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | (..((.(((....(((.((((.....))..))..)))...))).))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ........(((....[[[.))).((((........)))).]]].... |
| Fold | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ..(((((((.(.(.((.((((.....))..)).)).).).))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ..((((((((((((((((((((...)))..))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(...((((.(..(((.((((.....))..))..))).).)))).). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(...((((.(..(((.((((.....))..))..))).).)))).). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | (((((...(.(..(((...((.....))......))).).)))))). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((...((.(..(((...((.....))......))).).)))))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ...((((((....(((.((((.....))..))..)))...)))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ..(((((((..............((((........)))).))))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ............................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ..(((((((....(((...(((.......)))..)))...))))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((...((....(((.((((.....))..))..)))...)).))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((...((.(.(.((.((((.....))..)).)).).).)).))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((((((....(((.((((.....))..))..)))...)))))). |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ....(((((....(((.((((.....))..))..)))...))))).. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((((((....(((.((((.....))..))..)))...)))))). |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ....(((((....(((.((((.....))..))..)))...))))).. |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ............................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ....(((((.....((.((((.....))..))..))....))))).. |
| Pknots | [ FASTA input ] | [ sec struct ] | ..(((((((((........))..((((........)))).))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ..(((((((....(((..................)))...))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ........(((........)))......................... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..(((((((..............((((........)))).))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............(((..................))).......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ...((((((...............................)))))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....(((((....(((.((((.....))..))..)))...))))).. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ....(((((.(.(.((.((((.....))..)).)).).).))))).. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ..(((((((.(.(.((.((((.....))..)).)).).).))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ..(((((((((.(....).))).((((........))))..)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ....((((((...(((.(((........).)).)))...)))))).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..((((.((....(((...((.....))......)))...)).)))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .....((((....(((...((.....))......)))...))).).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ..(((((((....(((..................)))...))))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ............................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ...((((((....(((.((((.....))..))..)))...)))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ..(((((((....(((.((((.....))..))..)))...))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...((((((..............((((........)))).)))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ...((((((..............((((........)))).)))))). |
RNA: RFA_00730
| CUUUCCCGAGGCCACGGCGAGUAGCAUCGAGGGUACAGGAAAG | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((.(..(((....(((......)))..))).).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(...((.(((.........))).))...).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....)..))).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...........(((......)))........)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((((((...))))))))))(((..))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..)..)))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((((.(((..)))........)))........)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | (((((((((.(((..)))..[[[...)))....]]].)))))) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | .....(((..[[[.)))(((......)))..]]]......... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....(((......)))(((......))).............. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((...(((.(..............))))...))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
RNA: RFA_00731
| GGAAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUUCC | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((...))))))(.(((((...)))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((.(((....)))(((......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((.(((.(((.((.(((......))))))))).))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ........(((.....))).........((((......)))). |
RNA: RFA_00733
| GAGAGCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCUC | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((..................)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))...................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((...)))..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.(..(((......))).)))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.(.((.....)).....)))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((......)).(((......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ............................(((((.....))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((..)))(..).(((......)))((((..)))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
RNA: RFA_00734
| CAGUGCCGGGGCCACGCGGCGUACGAUCGUGGGUACAGCACUA | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((((....).)))))))).).)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((((..(..........................).))))). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((..................)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .(((((.(..((((((((.....))..))))).).).))))). |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((((.(..((((((((...()))..))))).).).))))). |
| Cylofold | [ FASTA input ] | [ sec struct ] | ...(((((...[[[[[)))))......]]]]]........... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....((((...[[[[[)))).......]]]]]........... |
| Fold | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((((....).)))))))).).))))). |
| IPknot | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .(((((((((((((((.((((..))))))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..)..)))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | .(((((.....(((((...........))))).....))))). |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ...(((((...[[[[[)))))......]]]]]((.....)).. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ...(((((...[[[[[)))))......]]]]]........... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .(((((....((((((...........))))).)...))))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | .(((((.....(((((...........))))).....))))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .(((((.....(((((...........))))).....))))). |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((((....).)))))))).).))))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((((....).)))))))).).))))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((((((........).))))))..)).)))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((((....).)))))))).).))))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....(((((((.....))..))))).....))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((((........))).((((........))))..)))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .....(((...[[[[[))).((((...]]]]]))))....... |
RNA: RFA_00736
| GGAGACCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGUCUCC | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((...))))))(.(((((...)))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((.(((....)))(((......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((.(((....)))(((......)))........)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((((..(((.(..............))))..)))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ........(((.....))).........((((......)))). |
RNA: RFA_00737
| ACUCGCCGAGGCCACGCCGAGUAGGACCGAGGGUACAGCGAGU | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))..(((...((...))))).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((..................)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(...((.((((.....))..)).))...).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...(((...))).......(((...)))...)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | .((((....(((...)))..[[[....))))..]]]....... |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((...))))))(.(((((...)))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..)..)))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((...(((...))).......(((...)))...)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....((........))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((((.....((.((((.....))..)).)).....)))))) |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((......))((.....))((.....))...)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))..(((..........))).)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((.((......(....)(((...((..)).)))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(.((.....))...)..)))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
RNA: RFA_00745
| ACUACCCGAGGCCACGCCGAGUUAGGAUCGAGGGUACAGGUAGU | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((......))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((.......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((((((((...))).........)))........)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((......))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((......))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((.......)))..)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((................................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((................................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((......))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((......))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((....(((.......))).).)).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.(..(((.......))).)))).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ..(((((..(((...))).............)))))........ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((.......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((.......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((((((((((..))))..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((......))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((......))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((......))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((......))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((((((...))).........)))........)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((.......)))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((......))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((......))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ............................................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((......))..))..))....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((......)).(((.......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((...................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ..(((((..........(((.......))).)))))........ |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))........ |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((...................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..........(((...................)))......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((......))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((......))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((.......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((.......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((((.((((.((((........)..))))))))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((......))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((......))......)))...)))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((...((......))......)))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((......))..))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))........ |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))........ |
RNA: RFA_00749
| GGGAGCCGCGGCCACGCCGAGUAGGAUCGAGGGUACAGCUCCC | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((..((((...)))).(((..........))).)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((...))))))(.(((((...)))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.(.((.....))...)..))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((.(((....)))(((......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((.(((....)))(((......)))........)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((..((((...))))..................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((.(((.(((.((.(((......))))))))).))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((..(((.....)))..................)))))) |
RNA: RFA_00758
| CAGUGCCAGGGCCACGCGGAGUACGAUCGAGGGUACAGCACCA | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | (.((((....(((.((((.....))..))..)))...)))).) |
| Alterna | [ FASTA input ] | [ sec struct ] | ..((((..(..........................).)))).. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ..((((....(((...((.....))......)))...)))).. |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ..((((....(((...((.....))......)))...)))).. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ..((((....(((...(((.......)))..)))...)))).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..((((..(.(((.((...........))..))).).)))).. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| ContextFold | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | ..((((..(.(((.(.(((.......))).)))).).)))).. |
| Cylofold | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))....... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ..((((....[[[...[[[.))))..]]]..]]]......... |
| Fold | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | ..((((....(((...(((.......)))..)))...)))).. |
| IPknot | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .(((((.((((((.(((.((((..)))))))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| McQFold | [ FASTA input ] | [ sec struct ] | ..((((..............((((........)))).)))).. |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ..((((....(((...(((.......)))..)))...)))).. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((((.....((.((((.....))..)).)).....)))))) |
| Pknots | [ FASTA input ] | [ sec struct ] | ..(((((..[[((....))....(......))))))....]]. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ..((((....(((..................)))...)))).. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...............................(((.....))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))....... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..((((....(((..................)))...)))).. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| RNAfold | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ..((((....(((...(((.......)))..)))...)))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ..(((.(...(((.(((........).)).)))....)))).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..((((....(((...((.....))......)))...)))).. |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ..((((....(((...((.....))......)))...)))).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ..((((....(((..................)))...)))).. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ..((((....(((.((((.....))..))..)))...)))).. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))....... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..(((((........................)))))....... |
RNA: RFA_00762
| CAGUGCCGAGGCCACUCGGAGUACGAUCGAGGGUACAGCACUA | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(((((.......))))))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.(((((.......)))))))).).))))). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.(((((.......)))))))).).))))). |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(((((....(((.(.((.....))...)..)))...))))). |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(.((.....))...)..)))...))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.(((((.......)))))))).).))))). |
| Cylofold | [ FASTA input ] | [ sec struct ] | .(((((((((....))))).((((........))))..)))). |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| Fold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| IPknot | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | .((((((((((..))))).((((((((..))))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.(.((.....))...)..))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.........)))))))...))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | .(((((((((....))))).((((........))))..)))). |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((..(((.........))).)))...))))). |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | .(((((((((....))))..((((........)))).))))). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....(((((....))))).((((........))))....... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....(((((....))))).((((........))))....... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((((((((....))))..((((........)))).))))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((.(((((((.(((((......).))))))))))))))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((((((....))))..((((........)))).))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.(((((.......))))))))...))))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((((((....))))..((((........)))).))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((((((((....))))..((((........)))).))))). |
RNA: RFA_00763
| UGAUGCCGAGGCCACGCCGGGUAGGAUCGAGGGUACAGCAUCG | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .(((((....(((....(((......)))..)))...))))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(...((.((((.....))..)).))...).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((....(((..[[[.))).........]]]...)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | .(((((....(((..[[[.))).........]]]...))))). |
| Fold | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| IPknot | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((...)))..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..)..)))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))..[[[...)))....]]].)))))) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((((.....((.((((.....))..))..))....)))))) |
| Pknots | [ FASTA input ] | [ sec struct ] | .((((((((.(((......)))....))).(....).))))). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....(((.........))).......(((..........))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((.(((((((.((((.......)..)))))))))))))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((((...............................))))). |
RNA: RFA_00764
| CAAUCCCGAGGCCACGCCGAGUAGGAUCGAGGGUACAGGAUUG | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((..................)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))...................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((...)))..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((((((...)))........)))........)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ........................................... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((((.....((.((((.....))..))..))....)))))) |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((......)).(((......))).(....).)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((...........(((......)))........)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((...(((.(..............))))...))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.(..(((......))).))))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((....(((......)))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
RNA: RFA_00765
| GAAAGCCGAGGCCACGCCGAGUAGGAACGAGGGUACAGCUUUC | |||
| Reference structure (ext) | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((.(..(((..................))).).)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..))..))).).)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.(...((.((((.....))..)).))...).)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.((((.....))..)).)).).).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))...................)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | .........(((...)))..(((.....[[[[[)))..]]]]] |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((...)))..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((.(..(((.((((.....))..))..))).).))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((...((.....))......))).).)))))) |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((.(..(((.(.((.....))...)..))).).)))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))...................)))))) |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((...........))..)))...)))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((((.(((...)))..[[[....))....]]].)))))) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((.....((.((((.....))..)).)).....))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((......))((.....)).((....))...)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((...(((...)))..(((..........))).)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ..........(((..................)))......... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((..................)))...)))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....(((.((((.....))..))..)))...))))). |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.(.(.((.((((.....))..)).)).).).))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((.(.(.((.((((.....))..)).)).).).)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((..)))(((((((...)))))))((((..)))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((...((.....))......)))...)))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....(((...((.....))......)))...))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....(((.((((.....))..))..)))...)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((...............................)))))) |