Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Carnac(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Carnac(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Carnac(seed) |
|---|
| MCC |
0.786 |
>
|
0.172 |
| Average MCC ± 95% Confidence Intervals |
0.713
±
0.219
|
>
|
0.078
±
0.199
|
| Sensitivity |
0.724 |
>
|
0.030 |
| Positive Predictive Value |
0.858 |
<
|
1.000 |
| Total TP |
97 |
>
|
4 |
| Total TN |
10099 |
<
|
10208 |
| Total FP |
33 |
>
|
0 |
| Total FP CONTRA |
3 |
>
|
0 |
| Total FP INCONS |
13 |
>
|
0 |
| Total FP COMP |
17 |
>
|
0 |
| Total FN |
37 |
<
|
130 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Carnac(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Carnac(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Carnac(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Carnac(seed)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
97 |
| Total TN |
10099 |
| Total FP |
33 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
13 |
| Total FP COMP |
17 |
| Total FN |
37 |
| Total Scores |
|---|
| MCC |
0.786 |
| Average MCC ± 95% Confidence Intervals |
0.713
±
0.219
|
| Sensitivity |
0.724 |
| Positive Predictive Value |
0.858 |
| Nr of predictions |
6 |
Performance of Carnac(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for Carnac(seed)
| Total Base Pair Counts |
|---|
| Total TP |
4 |
| Total TN |
10208 |
| Total FP |
0 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
0 |
| Total FP COMP |
0 |
| Total FN |
130 |
| Total Scores |
|---|
| MCC |
0.172 |
| Average MCC ± 95% Confidence Intervals |
0.078
±
0.199
|
| Sensitivity |
0.030 |
| Positive Predictive Value |
1.000 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
