Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of CentroidAlifold(20)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & CentroidAlifold(20) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
CentroidAlifold(20) |
|---|
| MCC |
0.835 |
>
|
0.779 |
| Average MCC ± 95% Confidence Intervals |
0.773
±
0.205
|
>
|
0.720
±
0.295
|
| Sensitivity |
0.784 |
>
|
0.672 |
| Positive Predictive Value |
0.892 |
<
|
0.907 |
| Total TP |
91 |
>
|
78 |
| Total TN |
9582 |
<
|
9598 |
| Total FP |
28 |
>
|
14 |
| Total FP CONTRA |
3 |
=
|
3 |
| Total FP INCONS |
8 |
>
|
5 |
| Total FP COMP |
17 |
>
|
6 |
| Total FN |
25 |
<
|
38 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and CentroidAlifold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and CentroidAlifold(20)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and CentroidAlifold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and CentroidAlifold(20)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
91 |
| Total TN |
9582 |
| Total FP |
28 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
8 |
| Total FP COMP |
17 |
| Total FN |
25 |
| Total Scores |
|---|
| MCC |
0.835 |
| Average MCC ± 95% Confidence Intervals |
0.773
±
0.205
|
| Sensitivity |
0.784 |
| Positive Predictive Value |
0.892 |
| Nr of predictions |
5 |
Performance of CentroidAlifold(20)
- scored lower in this pairwise comparison
1. Total counts & total scores for CentroidAlifold(20)
| Total Base Pair Counts |
|---|
| Total TP |
78 |
| Total TN |
9598 |
| Total FP |
14 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
5 |
| Total FP COMP |
6 |
| Total FN |
38 |
| Total Scores |
|---|
| MCC |
0.779 |
| Average MCC ± 95% Confidence Intervals |
0.720
±
0.295
|
| Sensitivity |
0.672 |
| Positive Predictive Value |
0.907 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
