Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Cylofold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Cylofold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Cylofold |
|---|
| MCC |
0.773 |
>
|
0.694 |
| Average MCC ± 95% Confidence Intervals |
0.737
±
0.238
|
>
|
0.728
±
0.275
|
| Sensitivity |
0.702 |
>
|
0.675 |
| Positive Predictive Value |
0.860 |
>
|
0.726 |
| Total TP |
80 |
>
|
77 |
| Total TN |
5292 |
>
|
5279 |
| Total FP |
28 |
<
|
37 |
| Total FP CONTRA |
2 |
<
|
9 |
| Total FP INCONS |
11 |
<
|
20 |
| Total FP COMP |
15 |
>
|
8 |
| Total FN |
34 |
<
|
37 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Cylofold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Cylofold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Cylofold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Cylofold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
80 |
| Total TN |
5292 |
| Total FP |
28 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
11 |
| Total FP COMP |
15 |
| Total FN |
34 |
| Total Scores |
|---|
| MCC |
0.773 |
| Average MCC ± 95% Confidence Intervals |
0.737
±
0.238
|
| Sensitivity |
0.702 |
| Positive Predictive Value |
0.860 |
| Nr of predictions |
6 |
Performance of Cylofold
- scored lower in this pairwise comparison
1. Total counts & total scores for Cylofold
| Total Base Pair Counts |
|---|
| Total TP |
77 |
| Total TN |
5279 |
| Total FP |
37 |
| Total FP CONTRA |
9 |
| Total FP INCONS |
20 |
| Total FP COMP |
8 |
| Total FN |
37 |
| Total Scores |
|---|
| MCC |
0.694 |
| Average MCC ± 95% Confidence Intervals |
0.728
±
0.275
|
| Sensitivity |
0.675 |
| Positive Predictive Value |
0.726 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
