Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of RDfolder
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & RDfolder [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
RDfolder |
|---|
| MCC |
0.745 |
>
|
0.317 |
| Average MCC ± 95% Confidence Intervals |
0.698
±
0.285
|
>
|
0.320
±
0.267
|
| Sensitivity |
0.673 |
>
|
0.286 |
| Positive Predictive Value |
0.835 |
>
|
0.384 |
| Total TP |
66 |
>
|
28 |
| Total TN |
4013 |
<
|
4019 |
| Total FP |
20 |
<
|
46 |
| Total FP CONTRA |
2 |
<
|
6 |
| Total FP INCONS |
11 |
<
|
39 |
| Total FP COMP |
7 |
>
|
1 |
| Total FN |
32 |
<
|
70 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and RDfolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RDfolder).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RDfolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RDfolder).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
66 |
| Total TN |
4013 |
| Total FP |
20 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
11 |
| Total FP COMP |
7 |
| Total FN |
32 |
| Total Scores |
|---|
| MCC |
0.745 |
| Average MCC ± 95% Confidence Intervals |
0.698
±
0.285
|
| Sensitivity |
0.673 |
| Positive Predictive Value |
0.835 |
| Nr of predictions |
5 |
Performance of RDfolder
- scored lower in this pairwise comparison
1. Total counts & total scores for RDfolder
| Total Base Pair Counts |
|---|
| Total TP |
28 |
| Total TN |
4019 |
| Total FP |
46 |
| Total FP CONTRA |
6 |
| Total FP INCONS |
39 |
| Total FP COMP |
1 |
| Total FN |
70 |
| Total Scores |
|---|
| MCC |
0.317 |
| Average MCC ± 95% Confidence Intervals |
0.320
±
0.267
|
| Sensitivity |
0.286 |
| Positive Predictive Value |
0.384 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
