 | ||||||||||||||
| ||||||||||||||
 | ||||||||||||||
Table of contents:
- Overview
- Performance Plots
- Performance of Afold - scored higher in this pairwise comparison
- Performance of CRWrnafold - scored lower in this pairwise comparison
- Compile and download dataset for Afold & CRWrnafold [.zip] - may take several seconds...
Overview
| Metric | Afold | CRWrnafold | |
|---|---|---|---|
| MCC | 0.638 | > | 0.564 |
| Average MCC ± 95% Confidence Intervals | 0.682 ± 0.165 | > | 0.629 ± 0.179 |
| Sensitivity | 0.592 | > | 0.515 |
| Positive Predictive Value | 0.695 | > | 0.627 |
| Total TP | 216 | > | 188 |
| Total TN | 38761 | < | 38772 |
| Total FP | 118 | < | 129 |
| Total FP CONTRA | 13 | < | 15 |
| Total FP INCONS | 82 | < | 97 |
| Total FP COMP | 23 | > | 17 |
| Total FN | 149 | < | 177 |
| P-value | 3.27388928538e-08 | ||
Performance plots
Performance of Afold - scored higher in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts | |
|---|---|
| Total TP | 216 |
| Total TN | 38761 |
| Total FP | 118 |
| Total FP CONTRA | 13 |
| Total FP INCONS | 82 |
| Total FP COMP | 23 |
| Total FN | 149 |
| Total Scores | |
|---|---|
| MCC | 0.638 |
| Average MCC ± 95% Confidence Intervals | 0.682 ± 0.165 |
| Sensitivity | 0.592 |
| Positive Predictive Value | 0.695 |
| Nr of predictions | 19 |
2. Individual counts for Afold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2LBS_A | - | 1.00 | 1.00 | 1.00 | 14 | 482 | 0 | 0 | 0 | 0 | 0 |
| 2LC8_A | 0.61 | 0.55 | 0.69 | 11 | 1524 | 6 | 0 | 5 | 1 | 9 | |
| 2LDL_A | - | 0.90 | 0.82 | 1.00 | 9 | 342 | 1 | 0 | 0 | 1 | 2 |
| 2LDT_A | - | 0.85 | 0.73 | 1.00 | 11 | 454 | 0 | 0 | 0 | 0 | 4 |
| 2LHP_A | - | 0.97 | 0.94 | 1.00 | 15 | 651 | 0 | 0 | 0 | 0 | 1 |
| 2LI4_A | - | 0.93 | 0.88 | 1.00 | 14 | 482 | 0 | 0 | 0 | 0 | 2 |
| 2LK3_A | - | 0.95 | 0.90 | 1.00 | 9 | 267 | 0 | 0 | 0 | 0 | 1 |
| 2LKR_A | - | 0.93 | 0.87 | 1.00 | 34 | 6071 | 3 | 0 | 0 | 3 | 5 |
| 2LQZ_A | - | 0.85 | 0.82 | 0.90 | 9 | 341 | 1 | 1 | 0 | 0 | 2 |
| 2YIE_X | - | 0.36 | 0.33 | 0.40 | 4 | 1368 | 8 | 2 | 4 | 2 | 8 |
| 2YIE_Z | - | -0.01 | 0.00 | 0.00 | 0 | 1525 | 16 | 3 | 12 | 1 | 12 |
| 3J0L_1 | - | 0.73 | 0.63 | 0.86 | 12 | 1211 | 3 | 0 | 2 | 1 | 7 |
| 3J0L_7 | - | -0.01 | 0.00 | 0.00 | 0 | 1210 | 15 | 1 | 14 | 0 | 17 |
| 3J0L_h | - | 0.73 | 0.60 | 0.90 | 26 | 6076 | 5 | 0 | 3 | 2 | 17 |
| 3SN2_B | 0.96 | 0.92 | 1.00 | 11 | 395 | 0 | 0 | 0 | 0 | 1 | |
| 3U4M_B | - | 0.38 | 0.32 | 0.46 | 12 | 3134 | 14 | 0 | 14 | 0 | 25 |
| 4A1C_2 | 0.14 | 0.15 | 0.14 | 5 | 11745 | 43 | 5 | 26 | 12 | 28 | |
| 4A4U_A | - | 1.00 | 1.00 | 1.00 | 9 | 222 | 0 | 0 | 0 | 0 | 0 |
| 4ENB_A | 0.67 | 0.58 | 0.79 | 11 | 1261 | 3 | 1 | 2 | 0 | 8 |
Performance of CRWrnafold - scored lower in this pairwise comparison
1. Total counts & total scores for CRWrnafold
| Total Base Pair Counts | |
|---|---|
| Total TP | 188 |
| Total TN | 38772 |
| Total FP | 129 |
| Total FP CONTRA | 15 |
| Total FP INCONS | 97 |
| Total FP COMP | 17 |
| Total FN | 177 |
| Total Scores | |
|---|---|
| MCC | 0.564 |
| Average MCC ± 95% Confidence Intervals | 0.629 ± 0.179 |
| Sensitivity | 0.515 |
| Positive Predictive Value | 0.627 |
| Nr of predictions | 19 |
2. Individual counts for CRWrnafold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2LBS_A | - | 1.00 | 1.00 | 1.00 | 14 | 482 | 0 | 0 | 0 | 0 | 0 |
| 2LC8_A | -0.01 | 0.00 | 0.00 | 0 | 1525 | 15 | 2 | 13 | 0 | 20 | |
| 2LDL_A | - | 0.85 | 0.73 | 1.00 | 8 | 343 | 1 | 0 | 0 | 1 | 3 |
| 2LDT_A | - | 0.85 | 0.73 | 1.00 | 11 | 454 | 0 | 0 | 0 | 0 | 4 |
| 2LHP_A | - | 0.93 | 0.88 | 1.00 | 14 | 652 | 0 | 0 | 0 | 0 | 2 |
| 2LI4_A | - | 0.93 | 0.88 | 1.00 | 14 | 482 | 0 | 0 | 0 | 0 | 2 |
| 2LK3_A | - | 0.95 | 0.90 | 1.00 | 9 | 267 | 0 | 0 | 0 | 0 | 1 |
| 2LKR_A | - | 0.52 | 0.44 | 0.63 | 17 | 6078 | 12 | 2 | 8 | 2 | 22 |
| 2LQZ_A | - | 0.85 | 0.82 | 0.90 | 9 | 341 | 1 | 1 | 0 | 0 | 2 |
| 2YIE_X | - | 0.36 | 0.33 | 0.40 | 4 | 1368 | 9 | 2 | 4 | 3 | 8 |
| 2YIE_Z | - | -0.01 | 0.00 | 0.00 | 0 | 1525 | 15 | 3 | 12 | 0 | 12 |
| 3J0L_1 | - | 0.76 | 0.63 | 0.92 | 12 | 1212 | 3 | 0 | 1 | 2 | 7 |
| 3J0L_7 | - | -0.01 | 0.00 | 0.00 | 0 | 1212 | 13 | 0 | 13 | 0 | 17 |
| 3J0L_h | - | 0.81 | 0.65 | 1.00 | 28 | 6077 | 0 | 0 | 0 | 0 | 15 |
| 3SN2_B | 0.96 | 0.92 | 1.00 | 11 | 395 | 0 | 0 | 0 | 0 | 1 | |
| 3U4M_B | - | 0.38 | 0.32 | 0.46 | 12 | 3134 | 14 | 0 | 14 | 0 | 25 |
| 4A1C_2 | 0.13 | 0.15 | 0.13 | 5 | 11741 | 44 | 4 | 31 | 9 | 28 | |
| 4A4U_A | - | 1.00 | 1.00 | 1.00 | 9 | 222 | 0 | 0 | 0 | 0 | 0 |
| 4ENB_A | 0.70 | 0.58 | 0.85 | 11 | 1262 | 2 | 1 | 1 | 0 | 8 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.