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Table of contents:
- Overview
- Performance Plots
- Performance of Alterna - scored higher in this pairwise comparison
- Performance of Carnac(seed) - scored lower in this pairwise comparison
- Compile and download dataset for Alterna & Carnac(seed) [.zip] - may take several seconds...
Overview
| Metric | Alterna | Carnac(seed) | |
|---|---|---|---|
| MCC | 0.758 | > | 0.382 |
| Average MCC ± 95% Confidence Intervals | 0.782 ± 0.104 | > | 0.283 ± 0.190 |
| Sensitivity | 0.676 | > | 0.147 |
| Positive Predictive Value | 0.854 | < | 1.000 |
| Total TP | 299 | > | 65 |
| Total TN | 35995 | < | 36280 |
| Total FP | 68 | > | 0 |
| Total FP CONTRA | 4 | > | 0 |
| Total FP INCONS | 47 | > | 0 |
| Total FP COMP | 17 | > | 0 |
| Total FN | 143 | < | 377 |
| P-value | 3.13260312532e-08 | ||
Performance plots
Performance of Alterna - scored higher in this pairwise comparison
1. Total counts & total scores for Alterna
| Total Base Pair Counts | |
|---|---|
| Total TP | 299 |
| Total TN | 35995 |
| Total FP | 68 |
| Total FP CONTRA | 4 |
| Total FP INCONS | 47 |
| Total FP COMP | 17 |
| Total FN | 143 |
| Total Scores | |
|---|---|
| MCC | 0.758 |
| Average MCC ± 95% Confidence Intervals | 0.782 ± 0.104 |
| Sensitivity | 0.676 |
| Positive Predictive Value | 0.854 |
| Nr of predictions | 17 |
2. Individual counts for Alterna [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2KE6_A | 0.92 | 0.89 | 0.94 | 17 | 1110 | 2 | 0 | 1 | 1 | 2 | |
| 2KUR_A | 0.90 | 0.86 | 0.95 | 18 | 1109 | 1 | 0 | 1 | 0 | 3 | |
| 2KUU_A | 0.87 | 0.81 | 0.94 | 17 | 1110 | 2 | 0 | 1 | 1 | 4 | |
| 2KUV_A | 0.88 | 0.82 | 0.95 | 18 | 1109 | 1 | 0 | 1 | 0 | 4 | |
| 2KUW_A | 0.95 | 0.90 | 1.00 | 19 | 1109 | 0 | 0 | 0 | 0 | 2 | |
| 2L1F_B | 0.98 | 0.96 | 1.00 | 24 | 2121 | 0 | 0 | 0 | 0 | 1 | |
| 2L1F_A | 0.98 | 0.96 | 1.00 | 23 | 2057 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | 0.46 | 0.40 | 0.53 | 8 | 1525 | 7 | 0 | 7 | 0 | 12 | |
| 2XKV_B | 0.45 | 0.45 | 0.45 | 9 | 4540 | 25 | 0 | 11 | 14 | 11 | |
| 3A3A_A | 0.84 | 0.70 | 1.00 | 26 | 3629 | 0 | 0 | 0 | 0 | 11 | |
| 3GX2_A | 0.47 | 0.40 | 0.57 | 16 | 4343 | 13 | 1 | 11 | 1 | 24 | |
| 3IVN_B | 0.74 | 0.61 | 0.90 | 19 | 2325 | 2 | 1 | 1 | 0 | 12 | |
| 3LA5_A | 0.78 | 0.62 | 1.00 | 21 | 2464 | 0 | 0 | 0 | 0 | 13 | |
| 3RKF_A | 0.69 | 0.56 | 0.86 | 19 | 2189 | 3 | 1 | 2 | 0 | 15 | |
| 3SD1_A | 0.46 | 0.38 | 0.57 | 16 | 3888 | 12 | 1 | 11 | 0 | 26 |
Performance of Carnac(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Carnac(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 65 |
| Total TN | 36280 |
| Total FP | 0 |
| Total FP CONTRA | 0 |
| Total FP INCONS | 0 |
| Total FP COMP | 0 |
| Total FN | 377 |
| Total Scores | |
|---|---|
| MCC | 0.382 |
| Average MCC ± 95% Confidence Intervals | 0.283 ± 0.190 |
| Sensitivity | 0.147 |
| Positive Predictive Value | 1.000 |
| Nr of predictions | 17 |
2. Individual counts for Carnac(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2KE6_A | 0.00 | 0.00 | 0.00 | 0 | 1128 | 0 | 0 | 0 | 0 | 19 | |
| 2KUR_A | 0.57 | 0.33 | 1.00 | 7 | 1121 | 0 | 0 | 0 | 0 | 14 | |
| 2KUU_A | 0.57 | 0.33 | 1.00 | 7 | 1121 | 0 | 0 | 0 | 0 | 14 | |
| 2KUV_A | 0.64 | 0.41 | 1.00 | 9 | 1119 | 0 | 0 | 0 | 0 | 13 | |
| 2KUW_A | 0.65 | 0.43 | 1.00 | 9 | 1119 | 0 | 0 | 0 | 0 | 12 | |
| 2L1F_B | 0.00 | 0.00 | 0.00 | 0 | 2145 | 0 | 0 | 0 | 0 | 25 | |
| 2L1F_A | 0.00 | 0.00 | 0.00 | 0 | 2080 | 0 | 0 | 0 | 0 | 24 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | 0.44 | 0.20 | 1.00 | 4 | 1536 | 0 | 0 | 0 | 0 | 16 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4560 | 0 | 0 | 0 | 0 | 20 | |
| 3A3A_A | 0.00 | 0.00 | 0.00 | 0 | 3655 | 0 | 0 | 0 | 0 | 37 | |
| 3GX2_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 40 | |
| 3IVN_B | 0.00 | 0.00 | 0.00 | 0 | 2346 | 0 | 0 | 0 | 0 | 31 | |
| 3LA5_A | 0.00 | 0.00 | 0.00 | 0 | 2485 | 0 | 0 | 0 | 0 | 34 | |
| 3RKF_A | 0.00 | 0.00 | 0.00 | 0 | 2211 | 0 | 0 | 0 | 0 | 34 | |
| 3SD1_A | 0.00 | 0.00 | 0.00 | 0 | 3916 | 0 | 0 | 0 | 0 | 42 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.