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Table of contents:
- Overview
- Performance Plots
- Performance of Carnac(20) - scored higher in this pairwise comparison
- Performance of Carnac(seed) - scored lower in this pairwise comparison
- Compile and download dataset for Carnac(20) & Carnac(seed) [.zip] - may take several seconds...
Overview
| Metric | Carnac(20) | Carnac(seed) | |
|---|---|---|---|
| MCC | 0.583 | > | 0.197 |
| Average MCC ± 95% Confidence Intervals | 0.502 ± 0.120 | > | 0.092 ± 0.132 |
| Sensitivity | 0.366 | > | 0.039 |
| Positive Predictive Value | 0.932 | < | 1.000 |
| Total TP | 273 | > | 29 |
| Total TN | 117077 | < | 117341 |
| Total FP | 35 | > | 0 |
| Total FP CONTRA | 2 | > | 0 |
| Total FP INCONS | 18 | > | 0 |
| Total FP COMP | 15 | > | 0 |
| Total FN | 473 | < | 717 |
| P-value | 5.1503931209e-08 | ||
Performance plots
Performance of Carnac(20) - scored higher in this pairwise comparison
1. Total counts & total scores for Carnac(20)
| Total Base Pair Counts | |
|---|---|
| Total TP | 273 |
| Total TN | 117077 |
| Total FP | 35 |
| Total FP CONTRA | 2 |
| Total FP INCONS | 18 |
| Total FP COMP | 15 |
| Total FN | 473 |
| Total Scores | |
|---|---|
| MCC | 0.583 |
| Average MCC ± 95% Confidence Intervals | 0.502 ± 0.120 |
| Sensitivity | 0.366 |
| Positive Predictive Value | 0.932 |
| Nr of predictions | 21 |
2. Individual counts for Carnac(20) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.73 | 0.55 | 1.00 | 6 | 400 | 0 | 0 | 0 | 0 | 5 | |
| 2L94_A | 0.00 | 0.00 | 0.00 | 0 | 990 | 0 | 0 | 0 | 0 | 20 | |
| 2XKV_B | 0.32 | 0.10 | 1.00 | 2 | 4558 | 1 | 0 | 0 | 1 | 18 | |
| 2XXA_G | 0.27 | 0.07 | 1.00 | 3 | 5148 | 0 | 0 | 0 | 0 | 39 | |
| 3GX2_A | 0.57 | 0.33 | 1.00 | 13 | 4358 | 0 | 0 | 0 | 0 | 27 | |
| 3IVN_B | 0.78 | 0.61 | 1.00 | 19 | 2327 | 0 | 0 | 0 | 0 | 12 | |
| 3IZF_C | 0.73 | 0.56 | 0.97 | 30 | 6872 | 1 | 0 | 1 | 0 | 24 | |
| 3JYX_4 | 0.46 | 0.21 | 1.00 | 7 | 12239 | 2 | 0 | 0 | 2 | 26 | |
| 3JYX_3 | 0.64 | 0.56 | 0.75 | 15 | 6308 | 10 | 1 | 4 | 5 | 12 | |
| 3LA5_A | 0.78 | 0.62 | 1.00 | 21 | 2464 | 0 | 0 | 0 | 0 | 13 | |
| 3NPB_A | 0.44 | 0.20 | 1.00 | 9 | 7012 | 2 | 0 | 0 | 2 | 37 | |
| 3O58_3 | 0.51 | 0.26 | 1.00 | 9 | 12394 | 0 | 0 | 0 | 0 | 26 | |
| 3O58_2 | 0.83 | 0.71 | 0.96 | 27 | 7232 | 2 | 0 | 1 | 1 | 11 | |
| 3PDR_A | 0.62 | 0.40 | 0.97 | 29 | 12850 | 3 | 0 | 1 | 2 | 43 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.60 | 0.38 | 0.94 | 16 | 3899 | 1 | 0 | 1 | 0 | 26 | |
| 4A1C_3 | 0.67 | 0.52 | 0.88 | 28 | 7108 | 4 | 0 | 4 | 0 | 26 | |
| 4A1C_2 | 0.33 | 0.15 | 0.71 | 5 | 11774 | 3 | 0 | 2 | 1 | 28 | |
| 4AOB_A | 0.49 | 0.33 | 0.74 | 14 | 4352 | 6 | 1 | 4 | 1 | 28 | |
| 4ENB_A | 0.00 | 0.00 | 0.00 | 0 | 1275 | 0 | 0 | 0 | 0 | 19 | |
| 4ENC_A | 0.00 | 0.00 | 0.00 | 0 | 1326 | 0 | 0 | 0 | 0 | 19 |
Performance of Carnac(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Carnac(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 29 |
| Total TN | 117341 |
| Total FP | 0 |
| Total FP CONTRA | 0 |
| Total FP INCONS | 0 |
| Total FP COMP | 0 |
| Total FN | 717 |
| Total Scores | |
|---|---|
| MCC | 0.197 |
| Average MCC ± 95% Confidence Intervals | 0.092 ± 0.132 |
| Sensitivity | 0.039 |
| Positive Predictive Value | 1.000 |
| Nr of predictions | 21 |
2. Individual counts for Carnac(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4560 | 0 | 0 | 0 | 0 | 20 | |
| 2XXA_G | 0.00 | 0.00 | 0.00 | 0 | 5151 | 0 | 0 | 0 | 0 | 42 | |
| 3GX2_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 40 | |
| 3IVN_B | 0.00 | 0.00 | 0.00 | 0 | 2346 | 0 | 0 | 0 | 0 | 31 | |
| 3IZF_C | 0.00 | 0.00 | 0.00 | 0 | 6903 | 0 | 0 | 0 | 0 | 54 | |
| 3JYX_4 | 0.00 | 0.00 | 0.00 | 0 | 12246 | 0 | 0 | 0 | 0 | 33 | |
| 3JYX_3 | 0.00 | 0.00 | 0.00 | 0 | 6328 | 0 | 0 | 0 | 0 | 27 | |
| 3LA5_A | 0.00 | 0.00 | 0.00 | 0 | 2485 | 0 | 0 | 0 | 0 | 34 | |
| 3NPB_A | 0.00 | 0.00 | 0.00 | 0 | 7021 | 0 | 0 | 0 | 0 | 46 | |
| 3O58_3 | 0.00 | 0.00 | 0.00 | 0 | 12403 | 0 | 0 | 0 | 0 | 35 | |
| 3O58_2 | 0.00 | 0.00 | 0.00 | 0 | 7260 | 0 | 0 | 0 | 0 | 38 | |
| 3PDR_A | 0.00 | 0.00 | 0.00 | 0 | 12880 | 0 | 0 | 0 | 0 | 72 | |
| 3RKF_A | 0.00 | 0.00 | 0.00 | 0 | 2211 | 0 | 0 | 0 | 0 | 34 | |
| 3SD1_A | 0.00 | 0.00 | 0.00 | 0 | 3916 | 0 | 0 | 0 | 0 | 42 | |
| 4A1C_3 | 0.00 | 0.00 | 0.00 | 0 | 7140 | 0 | 0 | 0 | 0 | 54 | |
| 4A1C_2 | 0.00 | 0.00 | 0.00 | 0 | 11781 | 0 | 0 | 0 | 0 | 33 | |
| 4AOB_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 42 | |
| 4ENB_A | 0.00 | 0.00 | 0.00 | 0 | 1275 | 0 | 0 | 0 | 0 | 19 | |
| 4ENC_A | 0.00 | 0.00 | 0.00 | 0 | 1326 | 0 | 0 | 0 | 0 | 19 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.