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Table of contents:
- Overview
- Performance Plots
- Performance of Cylofold - scored higher in this pairwise comparison
- Performance of Mastr(seed) - scored lower in this pairwise comparison
- Compile and download dataset for Cylofold & Mastr(seed) [.zip] - may take several seconds...
Overview
| Metric | Cylofold | Mastr(seed) | |
|---|---|---|---|
| MCC | 0.640 | > | 0.263 |
| Average MCC ± 95% Confidence Intervals | 0.676 ± 0.106 | > | 0.093 ± 0.134 |
| Sensitivity | 0.553 | > | 0.070 |
| Positive Predictive Value | 0.747 | < | 1.000 |
| Total TP | 372 | > | 47 |
| Total TN | 84273 | < | 84724 |
| Total FP | 151 | > | 0 |
| Total FP CONTRA | 20 | > | 0 |
| Total FP INCONS | 106 | > | 0 |
| Total FP COMP | 25 | > | 0 |
| Total FN | 301 | < | 626 |
| P-value | 5.19332990918e-08 | ||
Performance plots
Performance of Cylofold - scored higher in this pairwise comparison
1. Total counts & total scores for Cylofold
| Total Base Pair Counts | |
|---|---|
| Total TP | 372 |
| Total TN | 84273 |
| Total FP | 151 |
| Total FP CONTRA | 20 |
| Total FP INCONS | 106 |
| Total FP COMP | 25 |
| Total FN | 301 |
| Total Scores | |
|---|---|
| MCC | 0.640 |
| Average MCC ± 95% Confidence Intervals | 0.676 ± 0.106 |
| Sensitivity | 0.553 |
| Positive Predictive Value | 0.747 |
| Nr of predictions | 21 |
2. Individual counts for Cylofold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KX8_A | 0.94 | 0.89 | 1.00 | 16 | 845 | 0 | 0 | 0 | 0 | 2 | |
| 2L1F_A | 0.91 | 0.83 | 1.00 | 20 | 2060 | 0 | 0 | 0 | 0 | 4 | |
| 2L1F_B | 0.92 | 0.84 | 1.00 | 21 | 2124 | 0 | 0 | 0 | 0 | 4 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | 0.61 | 0.55 | 0.69 | 11 | 1524 | 5 | 0 | 5 | 0 | 9 | |
| 2XKV_B | 0.38 | 0.40 | 0.36 | 8 | 4538 | 23 | 7 | 7 | 9 | 12 | |
| 2XQD_Y | 0.81 | 0.78 | 0.84 | 21 | 2825 | 4 | 4 | 0 | 0 | 6 | |
| 2XXA_G | 0.10 | 0.10 | 0.11 | 4 | 5115 | 32 | 1 | 31 | 0 | 38 | |
| 3AKZ_H | 0.66 | 0.57 | 0.76 | 16 | 2680 | 6 | 0 | 5 | 1 | 12 | |
| 3AMU_B | 0.67 | 0.59 | 0.76 | 16 | 2982 | 7 | 0 | 5 | 2 | 11 | |
| 3IZF_C | 0.68 | 0.56 | 0.83 | 30 | 6867 | 6 | 0 | 6 | 0 | 24 | |
| 3J16_L | 0.75 | 0.57 | 1.00 | 17 | 2758 | 0 | 0 | 0 | 0 | 13 | |
| 3O58_3 | 0.36 | 0.34 | 0.38 | 12 | 12371 | 29 | 5 | 15 | 9 | 23 | |
| 3O58_2 | 0.80 | 0.68 | 0.93 | 26 | 7232 | 3 | 0 | 2 | 1 | 12 | |
| 3PDR_A | 0.72 | 0.54 | 0.95 | 39 | 12839 | 4 | 0 | 2 | 2 | 33 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.62 | 0.50 | 0.78 | 21 | 3889 | 6 | 0 | 6 | 0 | 21 | |
| 3UZL_B | 0.45 | 0.38 | 0.54 | 14 | 3544 | 12 | 1 | 11 | 0 | 23 | |
| 4AOB_A | 0.35 | 0.26 | 0.48 | 11 | 4348 | 13 | 1 | 11 | 1 | 31 | |
| 4ENB_A | 0.89 | 0.79 | 1.00 | 15 | 1260 | 0 | 0 | 0 | 0 | 4 | |
| 4ENC_A | 0.86 | 0.79 | 0.94 | 15 | 1310 | 1 | 1 | 0 | 0 | 4 |
Performance of Mastr(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Mastr(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 47 |
| Total TN | 84724 |
| Total FP | 0 |
| Total FP CONTRA | 0 |
| Total FP INCONS | 0 |
| Total FP COMP | 0 |
| Total FN | 626 |
| Total Scores | |
|---|---|
| MCC | 0.263 |
| Average MCC ± 95% Confidence Intervals | 0.093 ± 0.134 |
| Sensitivity | 0.070 |
| Positive Predictive Value | 1.000 |
| Nr of predictions | 21 |
2. Individual counts for Mastr(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KX8_A | 0.00 | 0.00 | 0.00 | 0 | 861 | 0 | 0 | 0 | 0 | 18 | |
| 2L1F_A | 0.98 | 0.96 | 1.00 | 23 | 2057 | 0 | 0 | 0 | 0 | 1 | |
| 2L1F_B | 0.98 | 0.96 | 1.00 | 24 | 2121 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.00 | 0.00 | 0.00 | 0 | 990 | 0 | 0 | 0 | 0 | 20 | |
| 2LC8_A | 0.00 | 0.00 | 0.00 | 0 | 1540 | 0 | 0 | 0 | 0 | 20 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4560 | 0 | 0 | 0 | 0 | 20 | |
| 2XQD_Y | 0.00 | 0.00 | 0.00 | 0 | 2850 | 0 | 0 | 0 | 0 | 27 | |
| 2XXA_G | 0.00 | 0.00 | 0.00 | 0 | 5151 | 0 | 0 | 0 | 0 | 42 | |
| 3AKZ_H | 0.00 | 0.00 | 0.00 | 0 | 2701 | 0 | 0 | 0 | 0 | 28 | |
| 3AMU_B | 0.00 | 0.00 | 0.00 | 0 | 3003 | 0 | 0 | 0 | 0 | 27 | |
| 3IZF_C | 0.00 | 0.00 | 0.00 | 0 | 6903 | 0 | 0 | 0 | 0 | 54 | |
| 3J16_L | 0.00 | 0.00 | 0.00 | 0 | 2775 | 0 | 0 | 0 | 0 | 30 | |
| 3O58_3 | 0.00 | 0.00 | 0.00 | 0 | 12403 | 0 | 0 | 0 | 0 | 35 | |
| 3O58_2 | 0.00 | 0.00 | 0.00 | 0 | 7260 | 0 | 0 | 0 | 0 | 38 | |
| 3PDR_A | 0.00 | 0.00 | 0.00 | 0 | 12880 | 0 | 0 | 0 | 0 | 72 | |
| 3RKF_A | 0.00 | 0.00 | 0.00 | 0 | 2211 | 0 | 0 | 0 | 0 | 34 | |
| 3SD1_A | 0.00 | 0.00 | 0.00 | 0 | 3916 | 0 | 0 | 0 | 0 | 42 | |
| 3UZL_B | 0.00 | 0.00 | 0.00 | 0 | 3570 | 0 | 0 | 0 | 0 | 37 | |
| 4AOB_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 42 | |
| 4ENB_A | 0.00 | 0.00 | 0.00 | 0 | 1275 | 0 | 0 | 0 | 0 | 19 | |
| 4ENC_A | 0.00 | 0.00 | 0.00 | 0 | 1326 | 0 | 0 | 0 | 0 | 19 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.