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Table of contents:
- Overview
- Performance Plots
- Performance of Fold - scored higher in this pairwise comparison
- Performance of Carnac(seed) - scored lower in this pairwise comparison
- Compile and download dataset for Fold & Carnac(seed) [.zip] - may take several seconds...
Overview
| Metric | Fold | Carnac(seed) | |
|---|---|---|---|
| MCC | 0.657 | > | 0.275 |
| Average MCC ± 95% Confidence Intervals | 0.655 ± 0.129 | > | 0.175 ± 0.135 |
| Sensitivity | 0.594 | > | 0.076 |
| Positive Predictive Value | 0.731 | < | 1.000 |
| Total TP | 430 | > | 55 |
| Total TN | 98877 | < | 99410 |
| Total FP | 204 | > | 0 |
| Total FP CONTRA | 21 | > | 0 |
| Total FP INCONS | 137 | > | 0 |
| Total FP COMP | 46 | > | 0 |
| Total FN | 294 | < | 669 |
| P-value | 5.1503931209e-08 | ||
Performance plots
Performance of Fold - scored higher in this pairwise comparison
1. Total counts & total scores for Fold
| Total Base Pair Counts | |
|---|---|
| Total TP | 430 |
| Total TN | 98877 |
| Total FP | 204 |
| Total FP CONTRA | 21 |
| Total FP INCONS | 137 |
| Total FP COMP | 46 |
| Total FN | 294 |
| Total Scores | |
|---|---|
| MCC | 0.657 |
| Average MCC ± 95% Confidence Intervals | 0.655 ± 0.129 |
| Sensitivity | 0.594 |
| Positive Predictive Value | 0.731 |
| Nr of predictions | 22 |
2. Individual counts for Fold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KUR_A | 0.95 | 0.90 | 1.00 | 19 | 1109 | 0 | 0 | 0 | 0 | 2 | |
| 2KUU_A | 0.92 | 0.86 | 1.00 | 18 | 1110 | 1 | 0 | 0 | 1 | 3 | |
| 2KUV_A | 0.93 | 0.86 | 1.00 | 19 | 1109 | 0 | 0 | 0 | 0 | 3 | |
| 2KUW_A | 0.95 | 0.90 | 1.00 | 19 | 1109 | 0 | 0 | 0 | 0 | 2 | |
| 2L1F_A | 0.89 | 0.88 | 0.91 | 21 | 2057 | 2 | 0 | 2 | 0 | 3 | |
| 2L1F_B | 0.90 | 0.88 | 0.92 | 22 | 2121 | 2 | 0 | 2 | 0 | 3 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | -0.01 | 0.00 | 0.00 | 0 | 1525 | 15 | 2 | 13 | 0 | 20 | |
| 2XKV_B | 0.51 | 0.50 | 0.53 | 10 | 4541 | 24 | 0 | 9 | 15 | 10 | |
| 2XXA_G | 0.93 | 0.86 | 1.00 | 36 | 5115 | 0 | 0 | 0 | 0 | 6 | |
| 3IZF_C | 0.70 | 0.59 | 0.82 | 32 | 6864 | 7 | 1 | 6 | 0 | 22 | |
| 3NPB_A | 0.70 | 0.61 | 0.80 | 28 | 6986 | 10 | 1 | 6 | 3 | 18 | |
| 3O58_3 | 0.29 | 0.31 | 0.28 | 11 | 12363 | 41 | 3 | 26 | 12 | 24 | |
| 3O58_2 | 0.71 | 0.71 | 0.71 | 27 | 7222 | 12 | 3 | 8 | 1 | 11 | |
| 3PDR_A | 0.77 | 0.64 | 0.94 | 46 | 12831 | 5 | 0 | 3 | 2 | 26 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.57 | 0.48 | 0.69 | 20 | 3887 | 9 | 1 | 8 | 0 | 22 | |
| 4A1C_3 | 0.68 | 0.57 | 0.82 | 31 | 7102 | 7 | 1 | 6 | 0 | 23 | |
| 4A1C_2 | 0.14 | 0.15 | 0.14 | 5 | 11744 | 43 | 5 | 27 | 11 | 28 | |
| 4AOB_A | 0.50 | 0.40 | 0.63 | 17 | 4344 | 11 | 2 | 8 | 1 | 25 | |
| 4ENB_A | 0.32 | 0.26 | 0.42 | 5 | 1263 | 7 | 1 | 6 | 0 | 14 | |
| 4ENC_A | 0.31 | 0.26 | 0.38 | 5 | 1313 | 8 | 1 | 7 | 0 | 14 |
Performance of Carnac(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Carnac(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 55 |
| Total TN | 99410 |
| Total FP | 0 |
| Total FP CONTRA | 0 |
| Total FP INCONS | 0 |
| Total FP COMP | 0 |
| Total FN | 669 |
| Total Scores | |
|---|---|
| MCC | 0.275 |
| Average MCC ± 95% Confidence Intervals | 0.175 ± 0.135 |
| Sensitivity | 0.076 |
| Positive Predictive Value | 1.000 |
| Nr of predictions | 22 |
2. Individual counts for Carnac(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KUR_A | 0.57 | 0.33 | 1.00 | 7 | 1121 | 0 | 0 | 0 | 0 | 14 | |
| 2KUU_A | 0.57 | 0.33 | 1.00 | 7 | 1121 | 0 | 0 | 0 | 0 | 14 | |
| 2KUV_A | 0.64 | 0.41 | 1.00 | 9 | 1119 | 0 | 0 | 0 | 0 | 13 | |
| 2KUW_A | 0.65 | 0.43 | 1.00 | 9 | 1119 | 0 | 0 | 0 | 0 | 12 | |
| 2L1F_A | 0.00 | 0.00 | 0.00 | 0 | 2080 | 0 | 0 | 0 | 0 | 24 | |
| 2L1F_B | 0.00 | 0.00 | 0.00 | 0 | 2145 | 0 | 0 | 0 | 0 | 25 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | 0.44 | 0.20 | 1.00 | 4 | 1536 | 0 | 0 | 0 | 0 | 16 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4560 | 0 | 0 | 0 | 0 | 20 | |
| 2XXA_G | 0.00 | 0.00 | 0.00 | 0 | 5151 | 0 | 0 | 0 | 0 | 42 | |
| 3IZF_C | 0.00 | 0.00 | 0.00 | 0 | 6903 | 0 | 0 | 0 | 0 | 54 | |
| 3NPB_A | 0.00 | 0.00 | 0.00 | 0 | 7021 | 0 | 0 | 0 | 0 | 46 | |
| 3O58_3 | 0.00 | 0.00 | 0.00 | 0 | 12403 | 0 | 0 | 0 | 0 | 35 | |
| 3O58_2 | 0.00 | 0.00 | 0.00 | 0 | 7260 | 0 | 0 | 0 | 0 | 38 | |
| 3PDR_A | 0.00 | 0.00 | 0.00 | 0 | 12880 | 0 | 0 | 0 | 0 | 72 | |
| 3RKF_A | 0.00 | 0.00 | 0.00 | 0 | 2211 | 0 | 0 | 0 | 0 | 34 | |
| 3SD1_A | 0.00 | 0.00 | 0.00 | 0 | 3916 | 0 | 0 | 0 | 0 | 42 | |
| 4A1C_3 | 0.00 | 0.00 | 0.00 | 0 | 7140 | 0 | 0 | 0 | 0 | 54 | |
| 4A1C_2 | 0.00 | 0.00 | 0.00 | 0 | 11781 | 0 | 0 | 0 | 0 | 33 | |
| 4AOB_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 42 | |
| 4ENB_A | 0.00 | 0.00 | 0.00 | 0 | 1275 | 0 | 0 | 0 | 0 | 19 | |
| 4ENC_A | 0.00 | 0.00 | 0.00 | 0 | 1326 | 0 | 0 | 0 | 0 | 19 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.