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Table of contents:
- Overview
- Performance Plots
- Performance of Fold - scored higher in this pairwise comparison
- Performance of Mastr(20) - scored lower in this pairwise comparison
- Compile and download dataset for Fold & Mastr(20) [.zip] - may take several seconds...
Overview
| Metric | Fold | Mastr(20) | |
|---|---|---|---|
| MCC | 0.610 | > | 0.491 |
| Average MCC ± 95% Confidence Intervals | 0.607 ± 0.115 | > | 0.471 ± 0.154 |
| Sensitivity | 0.542 | > | 0.300 |
| Positive Predictive Value | 0.689 | < | 0.808 |
| Total TP | 410 | > | 227 |
| Total TN | 165322 | < | 165636 |
| Total FP | 237 | > | 65 |
| Total FP CONTRA | 24 | > | 6 |
| Total FP INCONS | 161 | > | 48 |
| Total FP COMP | 52 | > | 11 |
| Total FN | 346 | < | 529 |
| P-value | 3.18846395401e-08 | ||
Performance plots
Performance of Fold - scored higher in this pairwise comparison
1. Total counts & total scores for Fold
| Total Base Pair Counts | |
|---|---|
| Total TP | 410 |
| Total TN | 165322 |
| Total FP | 237 |
| Total FP CONTRA | 24 |
| Total FP INCONS | 161 |
| Total FP COMP | 52 |
| Total FN | 346 |
| Total Scores | |
|---|---|
| MCC | 0.610 |
| Average MCC ± 95% Confidence Intervals | 0.607 ± 0.115 |
| Sensitivity | 0.542 |
| Positive Predictive Value | 0.689 |
| Nr of predictions | 18 |
2. Individual counts for Fold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2XKV_B | 0.51 | 0.50 | 0.53 | 10 | 4541 | 24 | 0 | 9 | 15 | 10 | |
| 2XQD_Y | 0.88 | 0.78 | 1.00 | 21 | 2829 | 0 | 0 | 0 | 0 | 6 | |
| 2XXA_G | 0.93 | 0.86 | 1.00 | 36 | 5115 | 0 | 0 | 0 | 0 | 6 | |
| 3AMU_B | 0.64 | 0.59 | 0.70 | 16 | 2980 | 9 | 0 | 7 | 2 | 11 | |
| 3IZ4_A | 0.53 | 0.46 | 0.61 | 61 | 70776 | 44 | 5 | 34 | 5 | 71 | |
| 3IZF_C | 0.70 | 0.59 | 0.82 | 32 | 6864 | 7 | 1 | 6 | 0 | 22 | |
| 3NPB_A | 0.70 | 0.61 | 0.80 | 28 | 6986 | 10 | 1 | 6 | 3 | 18 | |
| 3O58_3 | 0.29 | 0.31 | 0.28 | 11 | 12363 | 41 | 3 | 26 | 12 | 24 | |
| 3O58_2 | 0.71 | 0.71 | 0.71 | 27 | 7222 | 12 | 3 | 8 | 1 | 11 | |
| 3PDR_A | 0.77 | 0.64 | 0.94 | 46 | 12831 | 5 | 0 | 3 | 2 | 26 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.57 | 0.48 | 0.69 | 20 | 3887 | 9 | 1 | 8 | 0 | 22 | |
| 4A1C_3 | 0.68 | 0.57 | 0.82 | 31 | 7102 | 7 | 1 | 6 | 0 | 23 | |
| 4A1C_2 | 0.14 | 0.15 | 0.14 | 5 | 11744 | 43 | 5 | 27 | 11 | 28 | |
| 4AOB_A | 0.50 | 0.40 | 0.63 | 17 | 4344 | 11 | 2 | 8 | 1 | 25 | |
| 4ENB_A | 0.32 | 0.26 | 0.42 | 5 | 1263 | 7 | 1 | 6 | 0 | 14 | |
| 4ENC_A | 0.31 | 0.26 | 0.38 | 5 | 1313 | 8 | 1 | 7 | 0 | 14 |
Performance of Mastr(20) - scored lower in this pairwise comparison
1. Total counts & total scores for Mastr(20)
| Total Base Pair Counts | |
|---|---|
| Total TP | 227 |
| Total TN | 165636 |
| Total FP | 65 |
| Total FP CONTRA | 6 |
| Total FP INCONS | 48 |
| Total FP COMP | 11 |
| Total FN | 529 |
| Total Scores | |
|---|---|
| MCC | 0.491 |
| Average MCC ± 95% Confidence Intervals | 0.471 ± 0.154 |
| Sensitivity | 0.300 |
| Positive Predictive Value | 0.808 |
| Nr of predictions | 18 |
2. Individual counts for Mastr(20) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2L94_A | 0.87 | 0.80 | 0.94 | 16 | 973 | 1 | 0 | 1 | 0 | 4 | |
| 2XKV_B | 0.45 | 0.20 | 1.00 | 4 | 4556 | 3 | 0 | 0 | 3 | 16 | |
| 2XQD_Y | 0.88 | 0.78 | 1.00 | 21 | 2829 | 0 | 0 | 0 | 0 | 6 | |
| 2XXA_G | 0.41 | 0.17 | 1.00 | 7 | 5144 | 0 | 0 | 0 | 0 | 35 | |
| 3AMU_B | 0.77 | 0.59 | 1.00 | 16 | 2987 | 1 | 0 | 0 | 1 | 11 | |
| 3IZ4_A | 0.00 | 0.00 | 0.00 | 0 | 70876 | 0 | 0 | 0 | 0 | 132 | |
| 3IZF_C | 0.73 | 0.63 | 0.85 | 34 | 6863 | 7 | 1 | 5 | 1 | 20 | |
| 3NPB_A | 0.30 | 0.24 | 0.39 | 11 | 6993 | 18 | 1 | 16 | 1 | 35 | |
| 3O58_3 | 0.00 | 0.00 | 0.00 | 0 | 12403 | 0 | 0 | 0 | 0 | 35 | |
| 3O58_2 | 0.76 | 0.76 | 0.76 | 29 | 7222 | 12 | 3 | 6 | 3 | 9 | |
| 3PDR_A | 0.00 | 0.00 | 0.00 | 0 | 12880 | 0 | 0 | 0 | 0 | 72 | |
| 3RKF_A | 0.70 | 0.50 | 1.00 | 17 | 2194 | 0 | 0 | 0 | 0 | 17 | |
| 3SD1_A | 0.61 | 0.50 | 0.75 | 21 | 3888 | 7 | 1 | 6 | 0 | 21 | |
| 4A1C_3 | 0.70 | 0.59 | 0.84 | 32 | 7102 | 7 | 0 | 6 | 1 | 22 | |
| 4A1C_2 | 0.00 | 0.00 | 0.00 | 0 | 11781 | 0 | 0 | 0 | 0 | 33 | |
| 4AOB_A | 0.39 | 0.26 | 0.58 | 11 | 4352 | 9 | 0 | 8 | 1 | 31 | |
| 4ENB_A | 0.39 | 0.16 | 1.00 | 3 | 1272 | 0 | 0 | 0 | 0 | 16 | |
| 4ENC_A | 0.51 | 0.26 | 1.00 | 5 | 1321 | 0 | 0 | 0 | 0 | 14 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.