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Table of contents:
- Overview
- Performance Plots
- Performance of Mastr(20) - scored higher in this pairwise comparison
- Performance of RDfolder - scored lower in this pairwise comparison
- Compile and download dataset for Mastr(20) & RDfolder [.zip] - may take several seconds...
Overview
| Metric | Mastr(20) | RDfolder | |
|---|---|---|---|
| MCC | 0.655 | > | 0.529 |
| Average MCC ± 95% Confidence Intervals | 0.659 ± 0.101 | > | 0.546 ± 0.174 |
| Sensitivity | 0.503 | > | 0.431 |
| Positive Predictive Value | 0.858 | > | 0.659 |
| Total TP | 223 | > | 191 |
| Total TN | 42476 | > | 42446 |
| Total FP | 47 | < | 107 |
| Total FP CONTRA | 7 | < | 14 |
| Total FP INCONS | 30 | < | 85 |
| Total FP COMP | 10 | > | 8 |
| Total FN | 220 | < | 252 |
| P-value | 2.41358941668e-08 | ||
Performance plots
Performance of Mastr(20) - scored higher in this pairwise comparison
1. Total counts & total scores for Mastr(20)
| Total Base Pair Counts | |
|---|---|
| Total TP | 223 |
| Total TN | 42476 |
| Total FP | 47 |
| Total FP CONTRA | 7 |
| Total FP INCONS | 30 |
| Total FP COMP | 10 |
| Total FN | 220 |
| Total Scores | |
|---|---|
| MCC | 0.655 |
| Average MCC ± 95% Confidence Intervals | 0.659 ± 0.101 |
| Sensitivity | 0.503 |
| Positive Predictive Value | 0.858 |
| Nr of predictions | 16 |
2. Individual counts for Mastr(20) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.87 | 0.80 | 0.94 | 16 | 973 | 1 | 0 | 1 | 0 | 4 | |
| 2WRQ_Y | 0.57 | 0.59 | 0.56 | 10 | 2832 | 12 | 5 | 3 | 4 | 7 | |
| 2XKV_B | 0.45 | 0.20 | 1.00 | 4 | 4556 | 3 | 0 | 0 | 3 | 16 | |
| 2XQD_Y | 0.88 | 0.78 | 1.00 | 21 | 2829 | 0 | 0 | 0 | 0 | 6 | |
| 3A2K_C | 0.72 | 0.61 | 0.85 | 17 | 2906 | 3 | 0 | 3 | 0 | 11 | |
| 3AMU_B | 0.77 | 0.59 | 1.00 | 16 | 2987 | 1 | 0 | 0 | 1 | 11 | |
| 3GX2_A | 0.39 | 0.28 | 0.55 | 11 | 4351 | 10 | 0 | 9 | 1 | 29 | |
| 3IVN_B | 0.78 | 0.65 | 0.95 | 20 | 2325 | 1 | 1 | 0 | 0 | 11 | |
| 3JYV_7 | 0.81 | 0.66 | 1.00 | 21 | 2829 | 0 | 0 | 0 | 0 | 11 | |
| 3LA5_A | 0.76 | 0.59 | 1.00 | 20 | 2465 | 0 | 0 | 0 | 0 | 14 | |
| 3RKF_A | 0.70 | 0.50 | 1.00 | 17 | 2194 | 0 | 0 | 0 | 0 | 17 | |
| 3SD1_A | 0.61 | 0.50 | 0.75 | 21 | 3888 | 7 | 1 | 6 | 0 | 21 | |
| 4AOB_A | 0.39 | 0.26 | 0.58 | 11 | 4352 | 9 | 0 | 8 | 1 | 31 | |
| 4ENB_A | 0.39 | 0.16 | 1.00 | 3 | 1272 | 0 | 0 | 0 | 0 | 16 | |
| 4ENC_A | 0.51 | 0.26 | 1.00 | 5 | 1321 | 0 | 0 | 0 | 0 | 14 |
Performance of RDfolder - scored lower in this pairwise comparison
1. Total counts & total scores for RDfolder
| Total Base Pair Counts | |
|---|---|
| Total TP | 191 |
| Total TN | 42446 |
| Total FP | 107 |
| Total FP CONTRA | 14 |
| Total FP INCONS | 85 |
| Total FP COMP | 8 |
| Total FN | 252 |
| Total Scores | |
|---|---|
| MCC | 0.529 |
| Average MCC ± 95% Confidence Intervals | 0.546 ± 0.174 |
| Sensitivity | 0.431 |
| Positive Predictive Value | 0.659 |
| Nr of predictions | 16 |
2. Individual counts for RDfolder [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2WRQ_Y | 0.57 | 0.59 | 0.56 | 10 | 2832 | 12 | 5 | 3 | 4 | 7 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4538 | 22 | 5 | 17 | 0 | 20 | |
| 2XQD_Y | 0.88 | 0.78 | 1.00 | 21 | 2829 | 0 | 0 | 0 | 0 | 6 | |
| 3A2K_C | 0.86 | 0.75 | 1.00 | 21 | 2905 | 0 | 0 | 0 | 0 | 7 | |
| 3AMU_B | 0.18 | 0.15 | 0.22 | 4 | 2985 | 16 | 2 | 12 | 2 | 23 | |
| 3GX2_A | 0.50 | 0.40 | 0.64 | 16 | 4346 | 10 | 1 | 8 | 1 | 24 | |
| 3IVN_B | 0.78 | 0.61 | 1.00 | 19 | 2327 | 0 | 0 | 0 | 0 | 12 | |
| 3JYV_7 | -0.01 | 0.00 | 0.00 | 0 | 2830 | 20 | 0 | 20 | 0 | 32 | |
| 3LA5_A | 0.78 | 0.62 | 1.00 | 21 | 2464 | 0 | 0 | 0 | 0 | 13 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.30 | 0.17 | 0.54 | 7 | 3903 | 6 | 0 | 6 | 0 | 35 | |
| 4AOB_A | 0.35 | 0.26 | 0.48 | 11 | 4348 | 13 | 1 | 11 | 1 | 31 | |
| 4ENB_A | 0.43 | 0.32 | 0.60 | 6 | 1265 | 4 | 0 | 4 | 0 | 13 | |
| 4ENC_A | 0.43 | 0.32 | 0.60 | 6 | 1316 | 4 | 0 | 4 | 0 | 13 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.