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Table of contents:
- Overview
- Performance Plots
- Performance of McQFold - scored higher in this pairwise comparison
- Performance of Murlet(seed) - scored lower in this pairwise comparison
- Compile and download dataset for McQFold & Murlet(seed) [.zip] - may take several seconds...
Overview
| Metric | McQFold | Murlet(seed) | |
|---|---|---|---|
| MCC | 0.647 | > | 0.539 |
| Average MCC ± 95% Confidence Intervals | 0.695 ± 0.107 | > | 0.545 ± 0.074 |
| Sensitivity | 0.570 | > | 0.337 |
| Positive Predictive Value | 0.740 | < | 0.868 |
| Total TP | 446 | > | 264 |
| Total TN | 104196 | < | 104495 |
| Total FP | 189 | > | 46 |
| Total FP CONTRA | 28 | > | 5 |
| Total FP INCONS | 129 | > | 35 |
| Total FP COMP | 32 | > | 6 |
| Total FN | 337 | < | 519 |
| P-value | 5.02343278931e-08 | ||
Performance plots
Performance of McQFold - scored higher in this pairwise comparison
1. Total counts & total scores for McQFold
| Total Base Pair Counts | |
|---|---|
| Total TP | 446 |
| Total TN | 104196 |
| Total FP | 189 |
| Total FP CONTRA | 28 |
| Total FP INCONS | 129 |
| Total FP COMP | 32 |
| Total FN | 337 |
| Total Scores | |
|---|---|
| MCC | 0.647 |
| Average MCC ± 95% Confidence Intervals | 0.695 ± 0.107 |
| Sensitivity | 0.570 |
| Positive Predictive Value | 0.740 |
| Nr of predictions | 26 |
2. Individual counts for McQFold [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2KE6_A | 0.89 | 0.79 | 1.00 | 15 | 1113 | 1 | 0 | 0 | 1 | 4 | |
| 2KUR_A | 0.87 | 0.76 | 1.00 | 16 | 1112 | 0 | 0 | 0 | 0 | 5 | |
| 2KUU_A | 0.84 | 0.71 | 1.00 | 15 | 1113 | 1 | 0 | 0 | 1 | 6 | |
| 2KUV_A | 0.85 | 0.73 | 1.00 | 16 | 1112 | 0 | 0 | 0 | 0 | 6 | |
| 2KUW_A | 0.87 | 0.76 | 1.00 | 16 | 1112 | 0 | 0 | 0 | 0 | 5 | |
| 2L1F_A | 0.98 | 0.96 | 1.00 | 23 | 2057 | 0 | 0 | 0 | 0 | 1 | |
| 2L1F_B | 0.98 | 0.96 | 1.00 | 24 | 2121 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2LC8_A | 0.61 | 0.55 | 0.69 | 11 | 1524 | 5 | 0 | 5 | 0 | 9 | |
| 2XKV_B | 0.31 | 0.30 | 0.33 | 6 | 4542 | 25 | 1 | 11 | 13 | 14 | |
| 2XXA_G | 0.27 | 0.24 | 0.32 | 10 | 5120 | 21 | 0 | 21 | 0 | 32 | |
| 3A3A_A | 0.87 | 0.76 | 1.00 | 28 | 3627 | 0 | 0 | 0 | 0 | 9 | |
| 3GX2_A | 0.47 | 0.40 | 0.57 | 16 | 4343 | 13 | 1 | 11 | 1 | 24 | |
| 3IVN_B | 0.78 | 0.61 | 1.00 | 19 | 2327 | 0 | 0 | 0 | 0 | 12 | |
| 3JYX_4 | 0.20 | 0.21 | 0.19 | 7 | 12210 | 33 | 8 | 21 | 4 | 26 | |
| 3LA5_A | 0.78 | 0.62 | 1.00 | 21 | 2464 | 0 | 0 | 0 | 0 | 13 | |
| 3NPB_A | 0.81 | 0.67 | 0.97 | 31 | 6989 | 4 | 1 | 0 | 3 | 15 | |
| 3O58_3 | 0.26 | 0.26 | 0.26 | 9 | 12368 | 26 | 10 | 16 | 0 | 26 | |
| 3PDR_A | 0.69 | 0.56 | 0.87 | 40 | 12834 | 9 | 0 | 6 | 3 | 32 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.71 | 0.60 | 0.86 | 25 | 3887 | 4 | 0 | 4 | 0 | 17 | |
| 4A1C_2 | 0.15 | 0.15 | 0.15 | 5 | 11748 | 33 | 5 | 23 | 5 | 28 | |
| 4AOB_A | 0.42 | 0.33 | 0.54 | 14 | 4345 | 13 | 1 | 11 | 1 | 28 | |
| 4ENB_A | 0.89 | 0.79 | 1.00 | 15 | 1260 | 0 | 0 | 0 | 0 | 4 | |
| 4ENC_A | 0.86 | 0.79 | 0.94 | 15 | 1310 | 1 | 1 | 0 | 0 | 4 |
Performance of Murlet(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Murlet(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 264 |
| Total TN | 104495 |
| Total FP | 46 |
| Total FP CONTRA | 5 |
| Total FP INCONS | 35 |
| Total FP COMP | 6 |
| Total FN | 519 |
| Total Scores | |
|---|---|
| MCC | 0.539 |
| Average MCC ± 95% Confidence Intervals | 0.545 ± 0.074 |
| Sensitivity | 0.337 |
| Positive Predictive Value | 0.868 |
| Nr of predictions | 26 |
2. Individual counts for Murlet(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.52 | 0.27 | 1.00 | 3 | 403 | 0 | 0 | 0 | 0 | 8 | |
| 2KE6_A | 0.66 | 0.53 | 0.83 | 10 | 1116 | 2 | 0 | 2 | 0 | 9 | |
| 2KUR_A | 0.63 | 0.48 | 0.83 | 10 | 1116 | 2 | 0 | 2 | 0 | 11 | |
| 2KUU_A | 0.63 | 0.48 | 0.83 | 10 | 1116 | 2 | 0 | 2 | 0 | 11 | |
| 2KUV_A | 0.85 | 0.73 | 1.00 | 16 | 1112 | 0 | 0 | 0 | 0 | 6 | |
| 2KUW_A | 0.84 | 0.76 | 0.94 | 16 | 1111 | 1 | 0 | 1 | 0 | 5 | |
| 2L1F_A | 0.82 | 0.75 | 0.90 | 18 | 2060 | 2 | 0 | 2 | 0 | 6 | |
| 2L1F_B | 0.80 | 0.72 | 0.90 | 18 | 2125 | 2 | 0 | 2 | 0 | 7 | |
| 2L94_A | 0.59 | 0.40 | 0.89 | 8 | 981 | 1 | 0 | 1 | 0 | 12 | |
| 2LC8_A | -0.01 | 0.00 | 0.00 | 0 | 1528 | 12 | 0 | 12 | 0 | 20 | |
| 2XKV_B | 0.45 | 0.20 | 1.00 | 4 | 4556 | 2 | 0 | 0 | 2 | 16 | |
| 2XXA_G | 0.38 | 0.14 | 1.00 | 6 | 5145 | 0 | 0 | 0 | 0 | 36 | |
| 3A3A_A | 0.57 | 0.32 | 1.00 | 12 | 3643 | 0 | 0 | 0 | 0 | 25 | |
| 3GX2_A | 0.59 | 0.35 | 1.00 | 14 | 4357 | 1 | 0 | 0 | 1 | 26 | |
| 3IVN_B | 0.53 | 0.39 | 0.75 | 12 | 2330 | 4 | 2 | 2 | 0 | 19 | |
| 3JYX_4 | 0.23 | 0.09 | 0.60 | 3 | 12241 | 4 | 0 | 2 | 2 | 30 | |
| 3LA5_A | 0.58 | 0.41 | 0.82 | 14 | 2468 | 3 | 1 | 2 | 0 | 20 | |
| 3NPB_A | 0.49 | 0.28 | 0.87 | 13 | 7006 | 2 | 1 | 1 | 0 | 33 | |
| 3O58_3 | 0.45 | 0.20 | 1.00 | 7 | 12396 | 0 | 0 | 0 | 0 | 28 | |
| 3PDR_A | 0.44 | 0.19 | 1.00 | 14 | 12866 | 0 | 0 | 0 | 0 | 58 | |
| 3RKF_A | 0.53 | 0.35 | 0.80 | 12 | 2196 | 3 | 1 | 2 | 0 | 22 | |
| 3SD1_A | 0.47 | 0.26 | 0.85 | 11 | 3903 | 2 | 0 | 2 | 0 | 31 | |
| 4A1C_2 | 0.46 | 0.21 | 1.00 | 7 | 11774 | 0 | 0 | 0 | 0 | 26 | |
| 4AOB_A | 0.58 | 0.33 | 1.00 | 14 | 4357 | 1 | 0 | 0 | 1 | 28 | |
| 4ENB_A | 0.56 | 0.32 | 1.00 | 6 | 1269 | 0 | 0 | 0 | 0 | 13 | |
| 4ENC_A | 0.56 | 0.32 | 1.00 | 6 | 1320 | 0 | 0 | 0 | 0 | 13 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.