Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of CentroidAlifold(20)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & CentroidAlifold(20) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
CentroidAlifold(20) |
|---|
| MCC |
0.678 |
>
|
0.650 |
| Average MCC ± 95% Confidence Intervals |
0.625
±
0.179
|
>
|
0.613
±
0.256
|
| Sensitivity |
0.557 |
>
|
0.473 |
| Positive Predictive Value |
0.830 |
<
|
0.898 |
| Total TP |
93 |
>
|
79 |
| Total TN |
25781 |
<
|
25805 |
| Total FP |
26 |
>
|
13 |
| Total FP CONTRA |
2 |
>
|
1 |
| Total FP INCONS |
17 |
>
|
8 |
| Total FP COMP |
7 |
>
|
4 |
| Total FN |
74 |
<
|
88 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and CentroidAlifold(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and CentroidAlifold(20)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and CentroidAlifold(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and CentroidAlifold(20)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
93 |
| Total TN |
25781 |
| Total FP |
26 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
17 |
| Total FP COMP |
7 |
| Total FN |
74 |
| Total Scores |
|---|
| MCC |
0.678 |
| Average MCC ± 95% Confidence Intervals |
0.625
±
0.179
|
| Sensitivity |
0.557 |
| Positive Predictive Value |
0.830 |
| Nr of predictions |
5 |
Performance of CentroidAlifold(20)
- scored lower in this pairwise comparison
1. Total counts & total scores for CentroidAlifold(20)
| Total Base Pair Counts |
|---|
| Total TP |
79 |
| Total TN |
25805 |
| Total FP |
13 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
8 |
| Total FP COMP |
4 |
| Total FN |
88 |
| Total Scores |
|---|
| MCC |
0.650 |
| Average MCC ± 95% Confidence Intervals |
0.613
±
0.256
|
| Sensitivity |
0.473 |
| Positive Predictive Value |
0.898 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
