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Table of contents:
- Overview
- Performance Plots
- Performance of RNASLOpt - scored higher in this pairwise comparison
- Performance of RDfolder - scored lower in this pairwise comparison
- Compile and download dataset for RNASLOpt & RDfolder [.zip] - may take several seconds...
Overview
| Metric | RNASLOpt | RDfolder | |
|---|---|---|---|
| MCC | 0.571 | > | 0.481 |
| Average MCC ± 95% Confidence Intervals | 0.645 ± 0.178 | > | 0.561 ± 0.209 |
| Sensitivity | 0.462 | > | 0.379 |
| Positive Predictive Value | 0.718 | > | 0.623 |
| Total TP | 117 | > | 96 |
| Total TN | 17360 | < | 17369 |
| Total FP | 52 | < | 60 |
| Total FP CONTRA | 5 | = | 5 |
| Total FP INCONS | 41 | < | 53 |
| Total FP COMP | 6 | > | 2 |
| Total FN | 136 | < | 157 |
| P-value | 1.5677163434e-08 | ||
Performance plots
Performance of RNASLOpt - scored higher in this pairwise comparison
1. Total counts & total scores for RNASLOpt
| Total Base Pair Counts | |
|---|---|
| Total TP | 117 |
| Total TN | 17360 |
| Total FP | 52 |
| Total FP CONTRA | 5 |
| Total FP INCONS | 41 |
| Total FP COMP | 6 |
| Total FN | 136 |
| Total Scores | |
|---|---|
| MCC | 0.571 |
| Average MCC ± 95% Confidence Intervals | 0.645 ± 0.178 |
| Sensitivity | 0.462 |
| Positive Predictive Value | 0.718 |
| Nr of predictions | 17 |
2. Individual counts for RNASLOpt [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2LC8_A | 0.47 | 0.35 | 0.64 | 7 | 1529 | 4 | 0 | 4 | 0 | 13 | |
| 2LDL_A | - | 0.90 | 0.82 | 1.00 | 9 | 342 | 1 | 0 | 0 | 1 | 2 |
| 2LK3_A | - | 0.95 | 0.90 | 1.00 | 9 | 267 | 0 | 0 | 0 | 0 | 1 |
| 3J0L_7 | - | -0.01 | 0.00 | 0.00 | 0 | 1212 | 13 | 0 | 13 | 0 | 17 |
| 3J0L_g | - | -0.01 | 0.00 | 0.00 | 0 | 461 | 4 | 1 | 3 | 0 | 4 |
| 3J0L_8 | - | 0.70 | 0.50 | 1.00 | 4 | 186 | 0 | 0 | 0 | 0 | 4 |
| 3J0L_a | - | 0.26 | 0.19 | 0.38 | 3 | 1120 | 5 | 1 | 4 | 0 | 13 |
| 3J0L_1 | - | 0.65 | 0.47 | 0.90 | 9 | 1215 | 3 | 0 | 1 | 2 | 10 |
| 3J16_L | 0.53 | 0.40 | 0.71 | 12 | 2758 | 5 | 0 | 5 | 0 | 18 | |
| 3SN2_B | 0.96 | 0.92 | 1.00 | 11 | 395 | 0 | 0 | 0 | 0 | 1 | |
| 3TRZ_Z | - | 0.91 | 0.83 | 1.00 | 5 | 205 | 2 | 0 | 0 | 2 | 1 |
| 3TS0_U | - | 1.00 | 1.00 | 1.00 | 6 | 247 | 1 | 0 | 0 | 1 | 0 |
| 3TS2_V | - | 1.00 | 1.00 | 1.00 | 5 | 271 | 0 | 0 | 0 | 0 | 0 |
| 4A4U_A | - | 1.00 | 1.00 | 1.00 | 9 | 222 | 0 | 0 | 0 | 0 | 0 |
| 4AOB_A | 0.26 | 0.19 | 0.38 | 8 | 4350 | 13 | 2 | 11 | 0 | 34 | |
| 4ENB_A | 0.76 | 0.58 | 1.00 | 11 | 1264 | 0 | 0 | 0 | 0 | 8 | |
| 4ENC_A | 0.65 | 0.47 | 0.90 | 9 | 1316 | 1 | 1 | 0 | 0 | 10 |
Performance of RDfolder - scored lower in this pairwise comparison
1. Total counts & total scores for RDfolder
| Total Base Pair Counts | |
|---|---|
| Total TP | 96 |
| Total TN | 17369 |
| Total FP | 60 |
| Total FP CONTRA | 5 |
| Total FP INCONS | 53 |
| Total FP COMP | 2 |
| Total FN | 157 |
| Total Scores | |
|---|---|
| MCC | 0.481 |
| Average MCC ± 95% Confidence Intervals | 0.561 ± 0.209 |
| Sensitivity | 0.379 |
| Positive Predictive Value | 0.623 |
| Nr of predictions | 17 |
2. Individual counts for RDfolder [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2LC8_A | -0.01 | 0.00 | 0.00 | 0 | 1526 | 14 | 2 | 12 | 0 | 20 | |
| 2LDL_A | - | 0.90 | 0.82 | 1.00 | 9 | 342 | 0 | 0 | 0 | 0 | 2 |
| 2LK3_A | - | 0.95 | 0.90 | 1.00 | 9 | 267 | 0 | 0 | 0 | 0 | 1 |
| 3J0L_7 | - | -0.01 | 0.00 | 0.00 | 0 | 1220 | 5 | 0 | 5 | 0 | 17 |
| 3J0L_g | - | -0.01 | 0.00 | 0.00 | 0 | 462 | 3 | 1 | 2 | 0 | 4 |
| 3J0L_8 | - | 0.86 | 0.75 | 1.00 | 6 | 184 | 0 | 0 | 0 | 0 | 2 |
| 3J0L_a | - | -0.01 | 0.00 | 0.00 | 0 | 1124 | 4 | 1 | 3 | 0 | 16 |
| 3J0L_1 | - | 0.65 | 0.47 | 0.90 | 9 | 1215 | 2 | 0 | 1 | 1 | 10 |
| 3J16_L | 0.22 | 0.17 | 0.31 | 5 | 2759 | 11 | 0 | 11 | 0 | 25 | |
| 3SN2_B | 0.96 | 0.92 | 1.00 | 11 | 395 | 0 | 0 | 0 | 0 | 1 | |
| 3TRZ_Z | - | 0.91 | 0.83 | 1.00 | 5 | 205 | 0 | 0 | 0 | 0 | 1 |
| 3TS0_U | - | 0.91 | 0.83 | 1.00 | 5 | 248 | 0 | 0 | 0 | 0 | 1 |
| 3TS2_V | - | 1.00 | 1.00 | 1.00 | 5 | 271 | 0 | 0 | 0 | 0 | 0 |
| 4A4U_A | - | 1.00 | 1.00 | 1.00 | 9 | 222 | 0 | 0 | 0 | 0 | 0 |
| 4AOB_A | 0.35 | 0.26 | 0.48 | 11 | 4348 | 13 | 1 | 11 | 1 | 31 | |
| 4ENB_A | 0.43 | 0.32 | 0.60 | 6 | 1265 | 4 | 0 | 4 | 0 | 13 | |
| 4ENC_A | 0.43 | 0.32 | 0.60 | 6 | 1316 | 4 | 0 | 4 | 0 | 13 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.