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Table of contents:
- Overview
- Performance Plots
- Performance of RNASampler(20) - scored higher in this pairwise comparison
- Performance of Carnac(seed) - scored lower in this pairwise comparison
- Compile and download dataset for RNASampler(20) & Carnac(seed) [.zip] - may take several seconds...
Overview
| Metric | RNASampler(20) | Carnac(seed) | |
|---|---|---|---|
| MCC | 0.637 | > | 0.197 |
| Average MCC ± 95% Confidence Intervals | 0.641 ± 0.092 | > | 0.092 ± 0.132 |
| Sensitivity | 0.481 | > | 0.039 |
| Positive Predictive Value | 0.849 | < | 1.000 |
| Total TP | 359 | > | 29 |
| Total TN | 116947 | < | 117341 |
| Total FP | 109 | > | 0 |
| Total FP CONTRA | 9 | > | 0 |
| Total FP INCONS | 55 | > | 0 |
| Total FP COMP | 45 | > | 0 |
| Total FN | 387 | < | 717 |
| P-value | 5.06544643719e-08 | ||
Performance plots
Performance of RNASampler(20) - scored higher in this pairwise comparison
1. Total counts & total scores for RNASampler(20)
| Total Base Pair Counts | |
|---|---|
| Total TP | 359 |
| Total TN | 116947 |
| Total FP | 109 |
| Total FP CONTRA | 9 |
| Total FP INCONS | 55 |
| Total FP COMP | 45 |
| Total FN | 387 |
| Total Scores | |
|---|---|
| MCC | 0.637 |
| Average MCC ± 95% Confidence Intervals | 0.641 ± 0.092 |
| Sensitivity | 0.481 |
| Positive Predictive Value | 0.849 |
| Nr of predictions | 21 |
2. Individual counts for RNASampler(20) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.92 | 0.90 | 0.95 | 18 | 971 | 1 | 0 | 1 | 0 | 2 | |
| 2XKV_B | 0.45 | 0.20 | 1.00 | 4 | 4556 | 2 | 0 | 0 | 2 | 16 | |
| 2XXA_G | 0.31 | 0.10 | 1.00 | 4 | 5147 | 0 | 0 | 0 | 0 | 38 | |
| 3GX2_A | 0.74 | 0.55 | 1.00 | 22 | 4349 | 1 | 0 | 0 | 1 | 18 | |
| 3IVN_B | 0.78 | 0.61 | 1.00 | 19 | 2327 | 0 | 0 | 0 | 0 | 12 | |
| 3IZF_C | 0.74 | 0.57 | 0.97 | 31 | 6871 | 1 | 0 | 1 | 0 | 23 | |
| 3JYX_4 | 0.32 | 0.30 | 0.34 | 10 | 12217 | 26 | 4 | 15 | 7 | 23 | |
| 3JYX_3 | 0.58 | 0.44 | 0.75 | 12 | 6312 | 11 | 0 | 4 | 7 | 15 | |
| 3LA5_A | 0.76 | 0.59 | 1.00 | 20 | 2465 | 0 | 0 | 0 | 0 | 14 | |
| 3NPB_A | 0.68 | 0.48 | 0.96 | 22 | 6998 | 4 | 1 | 0 | 3 | 24 | |
| 3O58_3 | 0.43 | 0.34 | 0.55 | 12 | 12381 | 18 | 2 | 8 | 8 | 23 | |
| 3O58_2 | 0.79 | 0.71 | 0.87 | 27 | 7229 | 5 | 2 | 2 | 1 | 11 | |
| 3PDR_A | 0.70 | 0.53 | 0.93 | 38 | 12839 | 5 | 0 | 3 | 2 | 34 | |
| 3RKF_A | 0.76 | 0.59 | 1.00 | 20 | 2191 | 0 | 0 | 0 | 0 | 14 | |
| 3SD1_A | 0.67 | 0.48 | 0.95 | 20 | 3895 | 1 | 0 | 1 | 0 | 22 | |
| 4A1C_3 | 0.74 | 0.56 | 1.00 | 30 | 7110 | 0 | 0 | 0 | 0 | 24 | |
| 4A1C_2 | 0.18 | 0.15 | 0.23 | 5 | 11759 | 30 | 0 | 17 | 13 | 28 | |
| 4AOB_A | 0.58 | 0.40 | 0.85 | 17 | 4351 | 4 | 0 | 3 | 1 | 25 | |
| 4ENB_A | 0.60 | 0.37 | 1.00 | 7 | 1268 | 0 | 0 | 0 | 0 | 12 | |
| 4ENC_A | 0.76 | 0.58 | 1.00 | 11 | 1315 | 0 | 0 | 0 | 0 | 8 |
Performance of Carnac(seed) - scored lower in this pairwise comparison
1. Total counts & total scores for Carnac(seed)
| Total Base Pair Counts | |
|---|---|
| Total TP | 29 |
| Total TN | 117341 |
| Total FP | 0 |
| Total FP CONTRA | 0 |
| Total FP INCONS | 0 |
| Total FP COMP | 0 |
| Total FN | 717 |
| Total Scores | |
|---|---|
| MCC | 0.197 |
| Average MCC ± 95% Confidence Intervals | 0.092 ± 0.132 |
| Sensitivity | 0.039 |
| Positive Predictive Value | 1.000 |
| Nr of predictions | 21 |
2. Individual counts for Carnac(seed) [ download as .csv ]
| RNA Chain | Rfam family | MCC | SENS | PPV | TP | TN | FP | FP CONTRA | FP INCONS | FP COMP | FN |
| 2KDQ_B | 0.95 | 0.91 | 1.00 | 10 | 396 | 0 | 0 | 0 | 0 | 1 | |
| 2L94_A | 0.97 | 0.95 | 1.00 | 19 | 971 | 0 | 0 | 0 | 0 | 1 | |
| 2XKV_B | 0.00 | 0.00 | 0.00 | 0 | 4560 | 0 | 0 | 0 | 0 | 20 | |
| 2XXA_G | 0.00 | 0.00 | 0.00 | 0 | 5151 | 0 | 0 | 0 | 0 | 42 | |
| 3GX2_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 40 | |
| 3IVN_B | 0.00 | 0.00 | 0.00 | 0 | 2346 | 0 | 0 | 0 | 0 | 31 | |
| 3IZF_C | 0.00 | 0.00 | 0.00 | 0 | 6903 | 0 | 0 | 0 | 0 | 54 | |
| 3JYX_4 | 0.00 | 0.00 | 0.00 | 0 | 12246 | 0 | 0 | 0 | 0 | 33 | |
| 3JYX_3 | 0.00 | 0.00 | 0.00 | 0 | 6328 | 0 | 0 | 0 | 0 | 27 | |
| 3LA5_A | 0.00 | 0.00 | 0.00 | 0 | 2485 | 0 | 0 | 0 | 0 | 34 | |
| 3NPB_A | 0.00 | 0.00 | 0.00 | 0 | 7021 | 0 | 0 | 0 | 0 | 46 | |
| 3O58_3 | 0.00 | 0.00 | 0.00 | 0 | 12403 | 0 | 0 | 0 | 0 | 35 | |
| 3O58_2 | 0.00 | 0.00 | 0.00 | 0 | 7260 | 0 | 0 | 0 | 0 | 38 | |
| 3PDR_A | 0.00 | 0.00 | 0.00 | 0 | 12880 | 0 | 0 | 0 | 0 | 72 | |
| 3RKF_A | 0.00 | 0.00 | 0.00 | 0 | 2211 | 0 | 0 | 0 | 0 | 34 | |
| 3SD1_A | 0.00 | 0.00 | 0.00 | 0 | 3916 | 0 | 0 | 0 | 0 | 42 | |
| 4A1C_3 | 0.00 | 0.00 | 0.00 | 0 | 7140 | 0 | 0 | 0 | 0 | 54 | |
| 4A1C_2 | 0.00 | 0.00 | 0.00 | 0 | 11781 | 0 | 0 | 0 | 0 | 33 | |
| 4AOB_A | 0.00 | 0.00 | 0.00 | 0 | 4371 | 0 | 0 | 0 | 0 | 42 | |
| 4ENB_A | 0.00 | 0.00 | 0.00 | 0 | 1275 | 0 | 0 | 0 | 0 | 19 | |
| 4ENC_A | 0.00 | 0.00 | 0.00 | 0 | 1326 | 0 | 0 | 0 | 0 | 19 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based on the paper by Gardener & Giegerich, 2004.