Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of Pknots
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & Pknots [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
Pknots |
|---|
| MCC |
0.619 |
>
|
0.525 |
| Average MCC ± 95% Confidence Intervals |
0.603
±
0.416
|
<
|
0.624
±
0.667
|
| Sensitivity |
0.570 |
>
|
0.557 |
| Positive Predictive Value |
0.682 |
>
|
0.506 |
| Total TP |
45 |
>
|
44 |
| Total TN |
6855 |
>
|
6834 |
| Total FP |
33 |
<
|
62 |
| Total FP CONTRA |
2 |
<
|
13 |
| Total FP INCONS |
19 |
<
|
30 |
| Total FP COMP |
12 |
<
|
19 |
| Total FN |
34 |
<
|
35 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and Pknots. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Pknots).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and Pknots. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and Pknots).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
45 |
| Total TN |
6855 |
| Total FP |
33 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
19 |
| Total FP COMP |
12 |
| Total FN |
34 |
| Total Scores |
|---|
| MCC |
0.619 |
| Average MCC ± 95% Confidence Intervals |
0.603
±
0.416
|
| Sensitivity |
0.570 |
| Positive Predictive Value |
0.682 |
| Nr of predictions |
4 |
Performance of Pknots
- scored lower in this pairwise comparison
1. Total counts & total scores for Pknots
| Total Base Pair Counts |
|---|
| Total TP |
44 |
| Total TN |
6834 |
| Total FP |
62 |
| Total FP CONTRA |
13 |
| Total FP INCONS |
30 |
| Total FP COMP |
19 |
| Total FN |
35 |
| Total Scores |
|---|
| MCC |
0.525 |
| Average MCC ± 95% Confidence Intervals |
0.624
±
0.667
|
| Sensitivity |
0.557 |
| Positive Predictive Value |
0.506 |
| Nr of predictions |
4 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
