Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of NanoFolder
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & NanoFolder [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
NanoFolder |
|---|
| MCC |
0.709 |
>
|
0.336 |
| Average MCC ± 95% Confidence Intervals |
0.666
±
0.315
|
>
|
0.394
±
0.460
|
| Sensitivity |
0.634 |
>
|
0.415 |
| Positive Predictive Value |
0.800 |
>
|
0.288 |
| Total TP |
52 |
>
|
34 |
| Total TN |
6912 |
>
|
6859 |
| Total FP |
26 |
<
|
101 |
| Total FP CONTRA |
2 |
<
|
25 |
| Total FP INCONS |
11 |
<
|
59 |
| Total FP COMP |
13 |
<
|
17 |
| Total FN |
30 |
<
|
48 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and NanoFolder. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and NanoFolder).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and NanoFolder. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and NanoFolder).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
52 |
| Total TN |
6912 |
| Total FP |
26 |
| Total FP CONTRA |
2 |
| Total FP INCONS |
11 |
| Total FP COMP |
13 |
| Total FN |
30 |
| Total Scores |
|---|
| MCC |
0.709 |
| Average MCC ± 95% Confidence Intervals |
0.666
±
0.315
|
| Sensitivity |
0.634 |
| Positive Predictive Value |
0.800 |
| Nr of predictions |
4 |
Performance of NanoFolder
- scored lower in this pairwise comparison
1. Total counts & total scores for NanoFolder
| Total Base Pair Counts |
|---|
| Total TP |
34 |
| Total TN |
6859 |
| Total FP |
101 |
| Total FP CONTRA |
25 |
| Total FP INCONS |
59 |
| Total FP COMP |
17 |
| Total FN |
48 |
| Total Scores |
|---|
| MCC |
0.336 |
| Average MCC ± 95% Confidence Intervals |
0.394
±
0.460
|
| Sensitivity |
0.415 |
| Positive Predictive Value |
0.288 |
| Nr of predictions |
4 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
