Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of RNASampler(seed)
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & RNASampler(seed) [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
RNASampler(seed) |
|---|
| MCC |
0.630 |
>
|
0.232 |
| Average MCC ± 95% Confidence Intervals |
0.601
±
2.403
|
>
|
0.186
±
2.685
|
| Sensitivity |
0.553 |
>
|
0.211 |
| Positive Predictive Value |
0.724 |
>
|
0.267 |
| Total TP |
21 |
>
|
8 |
| Total TN |
5015 |
>
|
5014 |
| Total FP |
17 |
<
|
30 |
| Total FP CONTRA |
1 |
<
|
4 |
| Total FP INCONS |
7 |
<
|
18 |
| Total FP COMP |
9 |
>
|
8 |
| Total FN |
17 |
<
|
30 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and RNASampler(seed). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RNASampler(seed)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and RNASampler(seed). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and RNASampler(seed)).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
21 |
| Total TN |
5015 |
| Total FP |
17 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
7 |
| Total FP COMP |
9 |
| Total FN |
17 |
| Total Scores |
|---|
| MCC |
0.630 |
| Average MCC ± 95% Confidence Intervals |
0.601
±
2.403
|
| Sensitivity |
0.553 |
| Positive Predictive Value |
0.724 |
| Nr of predictions |
2 |
Performance of RNASampler(seed)
- scored lower in this pairwise comparison
1. Total counts & total scores for RNASampler(seed)
| Total Base Pair Counts |
|---|
| Total TP |
8 |
| Total TN |
5014 |
| Total FP |
30 |
| Total FP CONTRA |
4 |
| Total FP INCONS |
18 |
| Total FP COMP |
8 |
| Total FN |
30 |
| Total Scores |
|---|
| MCC |
0.232 |
| Average MCC ± 95% Confidence Intervals |
0.186
±
2.685
|
| Sensitivity |
0.211 |
| Positive Predictive Value |
0.267 |
| Nr of predictions |
2 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
