Table of contents:
- Overview
- Performance Plots
- Performance of Murlet(seed)
- scored higher in this pairwise comparison
- Performance of PETfold_pre2.0(20)
- scored lower in this pairwise comparison
- Compile and download dataset for Murlet(seed) & PETfold_pre2.0(20) [.zip] - may take several seconds...
Overview
| Metric |
Murlet(seed) |
|
PETfold_pre2.0(20) |
|---|
| MCC |
0.539 |
>
|
0.527 |
| Average MCC ± 95% Confidence Intervals |
0.538
±
0.084
|
>
|
0.523
±
0.372
|
| Sensitivity |
0.292 |
<
|
0.407 |
| Positive Predictive Value |
1.000 |
>
|
0.687 |
| Total TP |
33 |
<
|
46 |
| Total TN |
18720 |
>
|
18686 |
| Total FP |
1 |
<
|
32 |
| Total FP CONTRA |
0 |
=
|
0 |
| Total FP INCONS |
0 |
<
|
21 |
| Total FP COMP |
1 |
<
|
11 |
| Total FN |
80 |
>
|
67 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of Murlet(seed) and PETfold_pre2.0(20). Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for Murlet(seed)
and PETfold_pre2.0(20)).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for Murlet(seed) and PETfold_pre2.0(20). The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for Murlet(seed)
and PETfold_pre2.0(20)).
Performance of Murlet(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for Murlet(seed)
| Total Base Pair Counts |
|---|
| Total TP |
33 |
| Total TN |
18720 |
| Total FP |
1 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
0 |
| Total FP COMP |
1 |
| Total FN |
80 |
| Total Scores |
|---|
| MCC |
0.539 |
| Average MCC ± 95% Confidence Intervals |
0.538
±
0.084
|
| Sensitivity |
0.292 |
| Positive Predictive Value |
1.000 |
| Nr of predictions |
4 |
Performance of PETfold_pre2.0(20)
- scored lower in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
46 |
| Total TN |
18686 |
| Total FP |
32 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
21 |
| Total FP COMP |
11 |
| Total FN |
67 |
| Total Scores |
|---|
| MCC |
0.527 |
| Average MCC ± 95% Confidence Intervals |
0.523
±
0.372
|
| Sensitivity |
0.407 |
| Positive Predictive Value |
0.687 |
| Nr of predictions |
4 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
