Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
- Performance of ProbKnot
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(20) & ProbKnot [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(20) |
|
ProbKnot |
|---|
| MCC |
0.625 |
>
|
0.488 |
| Average MCC ± 95% Confidence Intervals |
0.581
±
0.300
|
>
|
0.507
±
0.305
|
| Sensitivity |
0.497 |
>
|
0.443 |
| Positive Predictive Value |
0.790 |
>
|
0.544 |
| Total TP |
83 |
>
|
74 |
| Total TN |
25788 |
>
|
25757 |
| Total FP |
33 |
<
|
75 |
| Total FP CONTRA |
0 |
<
|
12 |
| Total FP INCONS |
22 |
<
|
50 |
| Total FP COMP |
11 |
<
|
13 |
| Total FN |
84 |
<
|
93 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(20) and ProbKnot. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and ProbKnot).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(20) and ProbKnot. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(20)
and ProbKnot).
Performance of PETfold_pre2.0(20)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(20)
| Total Base Pair Counts |
|---|
| Total TP |
83 |
| Total TN |
25788 |
| Total FP |
33 |
| Total FP CONTRA |
0 |
| Total FP INCONS |
22 |
| Total FP COMP |
11 |
| Total FN |
84 |
| Total Scores |
|---|
| MCC |
0.625 |
| Average MCC ± 95% Confidence Intervals |
0.581
±
0.300
|
| Sensitivity |
0.497 |
| Positive Predictive Value |
0.790 |
| Nr of predictions |
5 |
Performance of ProbKnot
- scored lower in this pairwise comparison
1. Total counts & total scores for ProbKnot
| Total Base Pair Counts |
|---|
| Total TP |
74 |
| Total TN |
25757 |
| Total FP |
75 |
| Total FP CONTRA |
12 |
| Total FP INCONS |
50 |
| Total FP COMP |
13 |
| Total FN |
93 |
| Total Scores |
|---|
| MCC |
0.488 |
| Average MCC ± 95% Confidence Intervals |
0.507
±
0.305
|
| Sensitivity |
0.443 |
| Positive Predictive Value |
0.544 |
| Nr of predictions |
5 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
