Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Afold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Afold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Afold |
|---|
| MCC |
0.508 |
>
|
0.389 |
| Average MCC ± 95% Confidence Intervals |
0.490
±
0.213
|
>
|
0.474
±
0.718
|
| Sensitivity |
0.403 |
>
|
0.375 |
| Positive Predictive Value |
0.644 |
>
|
0.409 |
| Total TP |
29 |
>
|
27 |
| Total TN |
14551 |
>
|
14530 |
| Total FP |
22 |
<
|
52 |
| Total FP CONTRA |
1 |
<
|
6 |
| Total FP INCONS |
15 |
<
|
33 |
| Total FP COMP |
6 |
<
|
13 |
| Total FN |
43 |
<
|
45 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Afold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Afold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Afold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
29 |
| Total TN |
14551 |
| Total FP |
22 |
| Total FP CONTRA |
1 |
| Total FP INCONS |
15 |
| Total FP COMP |
6 |
| Total FN |
43 |
| Total Scores |
|---|
| MCC |
0.508 |
| Average MCC ± 95% Confidence Intervals |
0.490
±
0.213
|
| Sensitivity |
0.403 |
| Positive Predictive Value |
0.644 |
| Nr of predictions |
3 |
Performance of Afold
- scored lower in this pairwise comparison
1. Total counts & total scores for Afold
| Total Base Pair Counts |
|---|
| Total TP |
27 |
| Total TN |
14530 |
| Total FP |
52 |
| Total FP CONTRA |
6 |
| Total FP INCONS |
33 |
| Total FP COMP |
13 |
| Total FN |
45 |
| Total Scores |
|---|
| MCC |
0.389 |
| Average MCC ± 95% Confidence Intervals |
0.474
±
0.718
|
| Sensitivity |
0.375 |
| Positive Predictive Value |
0.409 |
| Nr of predictions |
3 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
