Table of contents:
- Overview
- Performance Plots
- Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
- Performance of Cylofold
- scored lower in this pairwise comparison
- Compile and download dataset for PETfold_pre2.0(seed) & Cylofold [.zip] - may take several seconds...
Overview
| Metric |
PETfold_pre2.0(seed) |
|
Cylofold |
|---|
| MCC |
0.651 |
>
|
0.601 |
| Average MCC ± 95% Confidence Intervals |
0.610
±
0.172
|
<
|
0.651
±
0.231
|
| Sensitivity |
0.521 |
>
|
0.497 |
| Positive Predictive Value |
0.821 |
>
|
0.735 |
| Total TP |
87 |
>
|
83 |
| Total TN |
14751 |
>
|
14744 |
| Total FP |
21 |
<
|
31 |
| Total FP CONTRA |
3 |
=
|
3 |
| Total FP INCONS |
16 |
<
|
27 |
| Total FP COMP |
2 |
>
|
1 |
| Total FN |
80 |
<
|
84 |
| P-value |
0.0 |
Performance plots
-
Comparison of performance of PETfold_pre2.0(seed) and Cylofold. Positive Predictive Value (PPV) is plotted against sensitivity. Each dot represents a single test of each method. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Cylofold).
-
Comparison of average Matthews Correlation Coefficients (MCCs) for PETfold_pre2.0(seed) and Cylofold. The whiskers correspond to 95% confidence intervals (CIs). 'n' denotes the number of MCCs used to calculate average MCCs and CIs. See tables below for raw data
(individual counts for PETfold_pre2.0(seed)
and Cylofold).
Performance of PETfold_pre2.0(seed)
- scored higher in this pairwise comparison
1. Total counts & total scores for PETfold_pre2.0(seed)
| Total Base Pair Counts |
|---|
| Total TP |
87 |
| Total TN |
14751 |
| Total FP |
21 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
16 |
| Total FP COMP |
2 |
| Total FN |
80 |
| Total Scores |
|---|
| MCC |
0.651 |
| Average MCC ± 95% Confidence Intervals |
0.610
±
0.172
|
| Sensitivity |
0.521 |
| Positive Predictive Value |
0.821 |
| Nr of predictions |
6 |
Performance of Cylofold
- scored lower in this pairwise comparison
1. Total counts & total scores for Cylofold
| Total Base Pair Counts |
|---|
| Total TP |
83 |
| Total TN |
14744 |
| Total FP |
31 |
| Total FP CONTRA |
3 |
| Total FP INCONS |
27 |
| Total FP COMP |
1 |
| Total FN |
84 |
| Total Scores |
|---|
| MCC |
0.601 |
| Average MCC ± 95% Confidence Intervals |
0.651
±
0.231
|
| Sensitivity |
0.497 |
| Positive Predictive Value |
0.735 |
| Nr of predictions |
6 |
Matthews Correlation Coeffient, Sensitivity and Positive Predictive Value have been calculated based
on the paper by Gardener & Giegerich, 2004.
| 
